miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5382 5' -60.5 NC_001798.1 + 77409 0.66 0.72116
Target:  5'- cGGcCGCCGacCUGguaGUCCAgGCGCgCCGg -3'
miRNA:   3'- aCCuGCGGC--GACg--CAGGUgUGUG-GGC- -5'
5382 5' -60.5 NC_001798.1 + 124512 0.66 0.72116
Target:  5'- gGGGgGCUGCgggcgUGuCGUCC-CACACUCGc -3'
miRNA:   3'- aCCUgCGGCG-----AC-GCAGGuGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 124259 0.66 0.72116
Target:  5'- gUGGACGCgGUuauccUGCGgcaggcgacCCGC-CGCCCGc -3'
miRNA:   3'- -ACCUGCGgCG-----ACGCa--------GGUGuGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 5369 0.66 0.72116
Target:  5'- -cGACGcCCGC-GCGUCCGCguccguggcgGCGgCCCGu -3'
miRNA:   3'- acCUGC-GGCGaCGCAGGUG----------UGU-GGGC- -5'
5382 5' -60.5 NC_001798.1 + 111138 0.66 0.711553
Target:  5'- aGGGCGgCGCUGuCGgcCCGCGCGucgcucCCCa -3'
miRNA:   3'- aCCUGCgGCGAC-GCa-GGUGUGU------GGGc -5'
5382 5' -60.5 NC_001798.1 + 124335 0.66 0.711553
Target:  5'- gGGACGgCGCggaaaGCGUC-AUcCGCCCGa -3'
miRNA:   3'- aCCUGCgGCGa----CGCAGgUGuGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 16195 0.66 0.711553
Target:  5'- gGGACGCacggGCcGCccUCCGCACGCgCCGc -3'
miRNA:   3'- aCCUGCGg---CGaCGc-AGGUGUGUG-GGC- -5'
5382 5' -60.5 NC_001798.1 + 80148 0.66 0.711553
Target:  5'- aGGACGCagcggaguccaUGCUGUucGUCCA-GCGCCUGa -3'
miRNA:   3'- aCCUGCG-----------GCGACG--CAGGUgUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 93280 0.66 0.711553
Target:  5'- -cGGCGCCGUcgggGCGUaCCugGCGCgCGc -3'
miRNA:   3'- acCUGCGGCGa---CGCA-GGugUGUGgGC- -5'
5382 5' -60.5 NC_001798.1 + 122515 0.66 0.711553
Target:  5'- gGGAC-CC-CUGCG-CCACccGCGCCCc -3'
miRNA:   3'- aCCUGcGGcGACGCaGGUG--UGUGGGc -5'
5382 5' -60.5 NC_001798.1 + 35581 0.66 0.711553
Target:  5'- cGcGGCGCUgcucgGCUGCGgCCGCGgGCuCCGg -3'
miRNA:   3'- aC-CUGCGG-----CGACGCaGGUGUgUG-GGC- -5'
5382 5' -60.5 NC_001798.1 + 45931 0.66 0.708658
Target:  5'- gGGugGCgGUcGCGUCCGgaaccccucuggggUAgGCCCGg -3'
miRNA:   3'- aCCugCGgCGaCGCAGGU--------------GUgUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 97915 0.66 0.701883
Target:  5'- aGcGuCGCUGCUGCG-CCACcagguGgACCCGg -3'
miRNA:   3'- aC-CuGCGGCGACGCaGGUG-----UgUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 69301 0.66 0.701883
Target:  5'- gGGGCGCCGggGaCGgucagcccucCCGCGCGCCgGg -3'
miRNA:   3'- aCCUGCGGCgaC-GCa---------GGUGUGUGGgC- -5'
5382 5' -60.5 NC_001798.1 + 85940 0.66 0.701883
Target:  5'- cGGAgacaGCUGCUGCacgcgcgCCGC-CGCCCGc -3'
miRNA:   3'- aCCUg---CGGCGACGca-----GGUGuGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 104153 0.66 0.700913
Target:  5'- -aGugGCCGCcccgccuggGCGUCCAgGCAcagggcggccagcCCCGg -3'
miRNA:   3'- acCugCGGCGa--------CGCAGGUgUGU-------------GGGC- -5'
5382 5' -60.5 NC_001798.1 + 24695 0.67 0.692159
Target:  5'- -cGGC-CCGCcGCGcCCcCGCGCCCGg -3'
miRNA:   3'- acCUGcGGCGaCGCaGGuGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 153233 0.67 0.692159
Target:  5'- cGGGC-CCGCggcgGCGgaggacCCGCGCGCCg- -3'
miRNA:   3'- aCCUGcGGCGa---CGCa-----GGUGUGUGGgc -5'
5382 5' -60.5 NC_001798.1 + 150457 0.67 0.692159
Target:  5'- gGGGCgacgGCCGCgcggggGCGcgCgGCGCGCCCc -3'
miRNA:   3'- aCCUG----CGGCGa-----CGCa-GgUGUGUGGGc -5'
5382 5' -60.5 NC_001798.1 + 143882 0.67 0.692159
Target:  5'- gGGACGCCGCcGC--CC-CGCGCuuGa -3'
miRNA:   3'- aCCUGCGGCGaCGcaGGuGUGUGggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.