miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5383 3' -67.5 NC_001798.1 + 69093 0.66 0.427504
Target:  5'- --gGCCCGC--CCGGaCCCCaGGGCgGa -3'
miRNA:   3'- ccaCGGGCGguGGCC-GGGGaCCCGgU- -5'
5383 3' -67.5 NC_001798.1 + 118786 0.66 0.427504
Target:  5'- gGGUGCUgcccacgcgaauCGUCGCCuGCCCCguggaccugGGGCUc -3'
miRNA:   3'- -CCACGG------------GCGGUGGcCGGGGa--------CCCGGu -5'
5383 3' -67.5 NC_001798.1 + 87733 0.66 0.42668
Target:  5'- --gGCCC-CCGCCGGCccgaaccccgcggCCCUGaGCCGc -3'
miRNA:   3'- ccaCGGGcGGUGGCCG-------------GGGACcCGGU- -5'
5383 3' -67.5 NC_001798.1 + 53962 0.66 0.419307
Target:  5'- --gGCCCuGCgGgCGGCggucagcgacgUCCUGGGCCAc -3'
miRNA:   3'- ccaCGGG-CGgUgGCCG-----------GGGACCCGGU- -5'
5383 3' -67.5 NC_001798.1 + 3546 0.66 0.419307
Target:  5'- --gGCCCGCCGCCauGGCguaCCCcaggUGGGgCAc -3'
miRNA:   3'- ccaCGGGCGGUGG--CCG---GGG----ACCCgGU- -5'
5383 3' -67.5 NC_001798.1 + 23286 0.66 0.419307
Target:  5'- --aGCCUGUCGCCGcGaCCCCcGGcGCCc -3'
miRNA:   3'- ccaCGGGCGGUGGC-C-GGGGaCC-CGGu -5'
5383 3' -67.5 NC_001798.1 + 31626 0.66 0.419307
Target:  5'- --cGCgCCGCCGCCGcCCCCgUGGuGUCu -3'
miRNA:   3'- ccaCG-GGCGGUGGCcGGGG-ACC-CGGu -5'
5383 3' -67.5 NC_001798.1 + 54362 0.66 0.419307
Target:  5'- --cGCCuCGCgGcguCCGGCCCaccgggGGGCCGc -3'
miRNA:   3'- ccaCGG-GCGgU---GGCCGGGga----CCCGGU- -5'
5383 3' -67.5 NC_001798.1 + 96438 0.66 0.419307
Target:  5'- --cGCgUGgCGCgagggggagCGGCUCCUGGGCCAc -3'
miRNA:   3'- ccaCGgGCgGUG---------GCCGGGGACCCGGU- -5'
5383 3' -67.5 NC_001798.1 + 456 0.66 0.419307
Target:  5'- cGGU-CCCGCgGCCGccuCCCCcGcGGCCGc -3'
miRNA:   3'- -CCAcGGGCGgUGGCc--GGGGaC-CCGGU- -5'
5383 3' -67.5 NC_001798.1 + 150355 0.66 0.411207
Target:  5'- cGGUGCgCGuCCACCGGCa-CggcGGGCg- -3'
miRNA:   3'- -CCACGgGC-GGUGGCCGggGa--CCCGgu -5'
5383 3' -67.5 NC_001798.1 + 32044 0.66 0.411207
Target:  5'- cGGgccGCUCGCC-CCGGCgUCCgcgGGcGCCGc -3'
miRNA:   3'- -CCa--CGGGCGGuGGCCG-GGGa--CC-CGGU- -5'
5383 3' -67.5 NC_001798.1 + 81453 0.66 0.411207
Target:  5'- cGGcgGCCCcacGCCcaauCCGGCCCC--GGCCc -3'
miRNA:   3'- -CCa-CGGG---CGGu---GGCCGGGGacCCGGu -5'
5383 3' -67.5 NC_001798.1 + 86877 0.66 0.407994
Target:  5'- cGGUcGCgcuuuuCCGCCGCCGGgaaCCCCggcguggagcgccGGGCCu -3'
miRNA:   3'- -CCA-CG------GGCGGUGGCC---GGGGa------------CCCGGu -5'
5383 3' -67.5 NC_001798.1 + 88661 0.66 0.403204
Target:  5'- --cGCCCaugGCCACCaGGCCCgc-GGCCGu -3'
miRNA:   3'- ccaCGGG---CGGUGG-CCGGGgacCCGGU- -5'
5383 3' -67.5 NC_001798.1 + 2615 0.66 0.403204
Target:  5'- cGGgGCgCCGcCCGgCGGCgCCCU-GGCCGg -3'
miRNA:   3'- -CCaCG-GGC-GGUgGCCG-GGGAcCCGGU- -5'
5383 3' -67.5 NC_001798.1 + 28980 0.66 0.403204
Target:  5'- --cGCCCGCCccagggggcggcGCCGGCCaaccgcgcgccgCCgcgcGGGCCc -3'
miRNA:   3'- ccaCGGGCGG------------UGGCCGG------------GGa---CCCGGu -5'
5383 3' -67.5 NC_001798.1 + 123402 0.66 0.402409
Target:  5'- --gGCCCcccgggaGCCG-CGGCCCCgccGGGUCAc -3'
miRNA:   3'- ccaCGGG-------CGGUgGCCGGGGa--CCCGGU- -5'
5383 3' -67.5 NC_001798.1 + 97556 0.66 0.396873
Target:  5'- gGGgacGCCCGCgagcgaggacggggaGCgCGGCCCCgagccaggggcgcagGGGCCGg -3'
miRNA:   3'- -CCa--CGGGCGg--------------UG-GCCGGGGa--------------CCCGGU- -5'
5383 3' -67.5 NC_001798.1 + 147209 0.66 0.394516
Target:  5'- cGGUccgGCCCggGCCcCCggcggagcgcgggGGCCCCgGGGCCc -3'
miRNA:   3'- -CCA---CGGG--CGGuGG-------------CCGGGGaCCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.