miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5383 5' -57.3 NC_001798.1 + 80406 0.66 0.865829
Target:  5'- cGGUGaGCGUCCucgggcgcauGUGUCUGCCgAGCGccGCu -3'
miRNA:   3'- -CCAC-CGUAGG----------CACAGGUGG-UCGU--CGu -5'
5383 5' -57.3 NC_001798.1 + 138754 0.66 0.865829
Target:  5'- --cGGCGaCCGUGgccagCUGCCggGGCAGCGu -3'
miRNA:   3'- ccaCCGUaGGCACa----GGUGG--UCGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 102515 0.66 0.858267
Target:  5'- cGG-GGUGUCCGUaggCCACCGuccccGCGGCc -3'
miRNA:   3'- -CCaCCGUAGGCAca-GGUGGU-----CGUCGu -5'
5383 5' -57.3 NC_001798.1 + 123953 0.66 0.858267
Target:  5'- uGGUGGCA-CC---UCC-CCGGCGGCc -3'
miRNA:   3'- -CCACCGUaGGcacAGGuGGUCGUCGu -5'
5383 5' -57.3 NC_001798.1 + 25947 0.66 0.858267
Target:  5'- --cGGCAgugcgCCGUGcgcUgGCCGGCGGCGc -3'
miRNA:   3'- ccaCCGUa----GGCACa--GgUGGUCGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 139387 0.66 0.842542
Target:  5'- --gGGaCGUCCGggcaccagGUCCGCCcccacAGCAGCc -3'
miRNA:   3'- ccaCC-GUAGGCa-------CAGGUGG-----UCGUCGu -5'
5383 5' -57.3 NC_001798.1 + 24202 0.66 0.834392
Target:  5'- cGUGGCGgccgCCGUGgCCAUgAGCcGCc -3'
miRNA:   3'- cCACCGUa---GGCACaGGUGgUCGuCGu -5'
5383 5' -57.3 NC_001798.1 + 109403 0.67 0.825217
Target:  5'- cGGUGuuccugaacGUGUCCGUGUuggacccggcggcCCGCCuGCGGCu -3'
miRNA:   3'- -CCAC---------CGUAGGCACA-------------GGUGGuCGUCGu -5'
5383 5' -57.3 NC_001798.1 + 53230 0.67 0.822678
Target:  5'- aGG-GGCuccucagcgcggCCGUgggcGUCCugCGGCAGCGc -3'
miRNA:   3'- -CCaCCGua----------GGCA----CAGGugGUCGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 135547 0.67 0.817554
Target:  5'- --aGGCGUCCGUGcgcgccguacuuUCgGCCAaCGGCAu -3'
miRNA:   3'- ccaCCGUAGGCAC------------AGgUGGUcGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 153019 0.67 0.817554
Target:  5'- cGG-GGCggaGUCCGgGcCCGCgCGGCGGCGc -3'
miRNA:   3'- -CCaCCG---UAGGCaCaGGUG-GUCGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 4023 0.67 0.816694
Target:  5'- cGUGGCGUCgCGgccggCCACCgccgcgcgggcccGGCGGCGc -3'
miRNA:   3'- cCACCGUAG-GCaca--GGUGG-------------UCGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 114288 0.67 0.808004
Target:  5'- cGUGGCGUgCGUGUgCACCAaguucccGgAGCu -3'
miRNA:   3'- cCACCGUAgGCACAgGUGGU-------CgUCGu -5'
5383 5' -57.3 NC_001798.1 + 139118 0.67 0.781943
Target:  5'- cGUGGCGUUgaggagcgCGUGgaagaucgCCGCCuGCAGCu -3'
miRNA:   3'- cCACCGUAG--------GCACa-------GGUGGuCGUCGu -5'
5383 5' -57.3 NC_001798.1 + 58622 0.68 0.763305
Target:  5'- cGGUGGCGgggacaggCCuuggaaaagcUGUCC-CCGGCGGCGg -3'
miRNA:   3'- -CCACCGUa-------GGc---------ACAGGuGGUCGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 150653 0.68 0.734507
Target:  5'- cGGggGGCGUCC-UGcccUCCGCCGccGCGGCGu -3'
miRNA:   3'- -CCa-CCGUAGGcAC---AGGUGGU--CGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 54369 0.68 0.733531
Target:  5'- --cGGCGUCCG-GcCCACCGgggggccGCGGCGc -3'
miRNA:   3'- ccaCCGUAGGCaCaGGUGGU-------CGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 108333 0.69 0.694919
Target:  5'- --cGGCAUCCGUGcCCAugcuUCGGUGGUAc -3'
miRNA:   3'- ccaCCGUAGGCACaGGU----GGUCGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 24133 0.69 0.693917
Target:  5'- cGUGGCGcgggCCGUGccCCACCugggguacgccauGGCGGCGg -3'
miRNA:   3'- cCACCGUa---GGCACa-GGUGG-------------UCGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 2710 0.69 0.674778
Target:  5'- --cGGCGaCgGUGUCgGCCAGCAGgGg -3'
miRNA:   3'- ccaCCGUaGgCACAGgUGGUCGUCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.