miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5383 5' -57.3 NC_001798.1 + 2710 0.69 0.674778
Target:  5'- --cGGCGaCgGUGUCgGCCAGCAGgGg -3'
miRNA:   3'- ccaCCGUaGgCACAGgUGGUCGUCgU- -5'
5383 5' -57.3 NC_001798.1 + 4023 0.67 0.816694
Target:  5'- cGUGGCGUCgCGgccggCCACCgccgcgcgggcccGGCGGCGc -3'
miRNA:   3'- cCACCGUAG-GCaca--GGUGG-------------UCGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 11635 0.73 0.457182
Target:  5'- cGGgcgcgGGCGUCCcuGUGUCC-CCGGgGGCGg -3'
miRNA:   3'- -CCa----CCGUAGG--CACAGGuGGUCgUCGU- -5'
5383 5' -57.3 NC_001798.1 + 12853 0.73 0.48515
Target:  5'- cGUGGCGUUgGUGgugucggacagcUCCGgCGGCAGCAg -3'
miRNA:   3'- cCACCGUAGgCAC------------AGGUgGUCGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 24133 0.69 0.693917
Target:  5'- cGUGGCGcgggCCGUGccCCACCugggguacgccauGGCGGCGg -3'
miRNA:   3'- cCACCGUa---GGCACa-GGUGG-------------UCGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 24202 0.66 0.834392
Target:  5'- cGUGGCGgccgCCGUGgCCAUgAGCcGCc -3'
miRNA:   3'- cCACCGUa---GGCACaGGUGgUCGuCGu -5'
5383 5' -57.3 NC_001798.1 + 25947 0.66 0.858267
Target:  5'- --cGGCAgugcgCCGUGcgcUgGCCGGCGGCGc -3'
miRNA:   3'- ccaCCGUa----GGCACa--GgUGGUCGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 30682 0.72 0.53938
Target:  5'- cGGUGGCGUaccugauagugggCGUGaCCGCCAGCGGg- -3'
miRNA:   3'- -CCACCGUAg------------GCACaGGUGGUCGUCgu -5'
5383 5' -57.3 NC_001798.1 + 53230 0.67 0.822678
Target:  5'- aGG-GGCuccucagcgcggCCGUgggcGUCCugCGGCAGCGc -3'
miRNA:   3'- -CCaCCGua----------GGCA----CAGGugGUCGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 54369 0.68 0.733531
Target:  5'- --cGGCGUCCG-GcCCACCGgggggccGCGGCGc -3'
miRNA:   3'- ccaCCGUAGGCaCaGGUGGU-------CGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 58622 0.68 0.763305
Target:  5'- cGGUGGCGgggacaggCCuuggaaaagcUGUCC-CCGGCGGCGg -3'
miRNA:   3'- -CCACCGUa-------GGc---------ACAGGuGGUCGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 69750 0.71 0.583377
Target:  5'- uGGUGGguUCCgGUGUCCgACUGGCugGGCc -3'
miRNA:   3'- -CCACCguAGG-CACAGG-UGGUCG--UCGu -5'
5383 5' -57.3 NC_001798.1 + 80406 0.66 0.865829
Target:  5'- cGGUGaGCGUCCucgggcgcauGUGUCUGCCgAGCGccGCu -3'
miRNA:   3'- -CCAC-CGUAGG----------CACAGGUGG-UCGU--CGu -5'
5383 5' -57.3 NC_001798.1 + 81436 0.71 0.583377
Target:  5'- -cUGGCGUCCGacgaCGCCGGCGGCc -3'
miRNA:   3'- ccACCGUAGGCacagGUGGUCGUCGu -5'
5383 5' -57.3 NC_001798.1 + 85286 0.72 0.533462
Target:  5'- cGGgggGGCGggggCCGggGUCCGCCcGCGGCc -3'
miRNA:   3'- -CCa--CCGUa---GGCa-CAGGUGGuCGUCGu -5'
5383 5' -57.3 NC_001798.1 + 88754 0.7 0.648398
Target:  5'- cGGgGGCGcgcaugccggccgccUCCGgaaaGUCgGCCAGCAGCu -3'
miRNA:   3'- -CCaCCGU---------------AGGCa---CAGgUGGUCGUCGu -5'
5383 5' -57.3 NC_001798.1 + 98584 0.72 0.533462
Target:  5'- cGGUGGCGUCgGcGgCC-CCGGCGGCc -3'
miRNA:   3'- -CCACCGUAGgCaCaGGuGGUCGUCGu -5'
5383 5' -57.3 NC_001798.1 + 102515 0.66 0.858267
Target:  5'- cGG-GGUGUCCGUaggCCACCGuccccGCGGCc -3'
miRNA:   3'- -CCaCCGUAGGCAca-GGUGGU-----CGUCGu -5'
5383 5' -57.3 NC_001798.1 + 108333 0.69 0.694919
Target:  5'- --cGGCAUCCGUGcCCAugcuUCGGUGGUAc -3'
miRNA:   3'- ccaCCGUAGGCACaGGU----GGUCGUCGU- -5'
5383 5' -57.3 NC_001798.1 + 109403 0.67 0.825217
Target:  5'- cGGUGuuccugaacGUGUCCGUGUuggacccggcggcCCGCCuGCGGCu -3'
miRNA:   3'- -CCAC---------CGUAGGCACA-------------GGUGGuCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.