Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5383 | 5' | -57.3 | NC_001798.1 | + | 113948 | 0.69 | 0.671744 |
Target: 5'- -uUGGCGgcCCGUggguuguuagucgcGUCCGCCGGCGGUg -3' miRNA: 3'- ccACCGUa-GGCA--------------CAGGUGGUCGUCGu -5' |
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5383 | 5' | -57.3 | NC_001798.1 | + | 114288 | 0.67 | 0.808004 |
Target: 5'- cGUGGCGUgCGUGUgCACCAaguucccGgAGCu -3' miRNA: 3'- cCACCGUAgGCACAgGUGGU-------CgUCGu -5' |
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5383 | 5' | -57.3 | NC_001798.1 | + | 120775 | 0.74 | 0.412582 |
Target: 5'- cGUGGCGUUgGUGUgcgucaCCACCcGCGGCAu -3' miRNA: 3'- cCACCGUAGgCACA------GGUGGuCGUCGU- -5' |
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5383 | 5' | -57.3 | NC_001798.1 | + | 123953 | 0.66 | 0.858267 |
Target: 5'- uGGUGGCA-CC---UCC-CCGGCGGCc -3' miRNA: 3'- -CCACCGUaGGcacAGGuGGUCGUCGu -5' |
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5383 | 5' | -57.3 | NC_001798.1 | + | 131482 | 0.7 | 0.62804 |
Target: 5'- aGUGGguUCCccggGUCCACCcgaaaacaacgaucgAGCGGCAg -3' miRNA: 3'- cCACCguAGGca--CAGGUGG---------------UCGUCGU- -5' |
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5383 | 5' | -57.3 | NC_001798.1 | + | 135547 | 0.67 | 0.817554 |
Target: 5'- --aGGCGUCCGUGcgcgccguacuuUCgGCCAaCGGCAu -3' miRNA: 3'- ccaCCGUAGGCAC------------AGgUGGUcGUCGU- -5' |
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5383 | 5' | -57.3 | NC_001798.1 | + | 138754 | 0.66 | 0.865829 |
Target: 5'- --cGGCGaCCGUGgccagCUGCCggGGCAGCGu -3' miRNA: 3'- ccaCCGUaGGCACa----GGUGG--UCGUCGU- -5' |
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5383 | 5' | -57.3 | NC_001798.1 | + | 139118 | 0.67 | 0.781943 |
Target: 5'- cGUGGCGUUgaggagcgCGUGgaagaucgCCGCCuGCAGCu -3' miRNA: 3'- cCACCGUAG--------GCACa-------GGUGGuCGUCGu -5' |
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5383 | 5' | -57.3 | NC_001798.1 | + | 139387 | 0.66 | 0.842542 |
Target: 5'- --gGGaCGUCCGggcaccagGUCCGCCcccacAGCAGCc -3' miRNA: 3'- ccaCC-GUAGGCa-------CAGGUGG-----UCGUCGu -5' |
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5383 | 5' | -57.3 | NC_001798.1 | + | 150653 | 0.68 | 0.734507 |
Target: 5'- cGGggGGCGUCC-UGcccUCCGCCGccGCGGCGu -3' miRNA: 3'- -CCa-CCGUAGGcAC---AGGUGGU--CGUCGU- -5' |
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5383 | 5' | -57.3 | NC_001798.1 | + | 153019 | 0.67 | 0.817554 |
Target: 5'- cGG-GGCggaGUCCGgGcCCGCgCGGCGGCGc -3' miRNA: 3'- -CCaCCG---UAGGCaCaGGUG-GUCGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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