miRNA display CGI


Results 1 - 20 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5384 3' -64.6 NC_001798.1 + 83842 0.66 0.58536
Target:  5'- cCGGUCCCCguccgggcggcgcugGCGGGcCCGAGG-CG-GCg -3'
miRNA:   3'- -GCCGGGGG---------------UGCUCcGGCUCCaGCgCG- -5'
5384 3' -64.6 NC_001798.1 + 92993 0.66 0.58536
Target:  5'- gCGGCCgCCCACcuGGCguucgacgaaaaccaCGAGGgCGCGg -3'
miRNA:   3'- -GCCGG-GGGUGcuCCG---------------GCUCCaGCGCg -5'
5384 3' -64.6 NC_001798.1 + 87202 0.66 0.58157
Target:  5'- uGGCCaccgucagCCGCGAGGCCcucauccuGGccuUCGUGCa -3'
miRNA:   3'- gCCGGg-------GGUGCUCCGGcu------CC---AGCGCG- -5'
5384 3' -64.6 NC_001798.1 + 124135 0.66 0.58157
Target:  5'- gCGcGCCCCCGcCGuGGCgGAGGccugucccUGCGUc -3'
miRNA:   3'- -GC-CGGGGGU-GCuCCGgCUCCa-------GCGCG- -5'
5384 3' -64.6 NC_001798.1 + 135061 0.66 0.58157
Target:  5'- cCGGCCgccuccugCCCGCcuuucGGGaaGcGGUCGCGCg -3'
miRNA:   3'- -GCCGG--------GGGUGc----UCCggCuCCAGCGCG- -5'
5384 3' -64.6 NC_001798.1 + 26279 0.66 0.58157
Target:  5'- cCGcGCCUgCGCGcgcugGGGCCuGGG-CGCGCc -3'
miRNA:   3'- -GC-CGGGgGUGC-----UCCGGcUCCaGCGCG- -5'
5384 3' -64.6 NC_001798.1 + 91231 0.66 0.58157
Target:  5'- cCGGUCUgaGCGAGGUgGGGGUUGUa- -3'
miRNA:   3'- -GCCGGGggUGCUCCGgCUCCAGCGcg -5'
5384 3' -64.6 NC_001798.1 + 13150 0.66 0.580624
Target:  5'- aGGUacguaCCCGCGgucucgaAGGCgGGGG-CGUGCa -3'
miRNA:   3'- gCCGg----GGGUGC-------UCCGgCUCCaGCGCG- -5'
5384 3' -64.6 NC_001798.1 + 39503 0.66 0.577786
Target:  5'- gGGCCCCCGgagacguCGAGcugcuccccuccgcGCCGcgccucgccguGGGUgGCGCc -3'
miRNA:   3'- gCCGGGGGU-------GCUC--------------CGGC-----------UCCAgCGCG- -5'
5384 3' -64.6 NC_001798.1 + 51123 0.66 0.575895
Target:  5'- -cGCCCCCGCgccgucgccggGAGGcCCGcGGUcaccccgggucccgaCGCGCg -3'
miRNA:   3'- gcCGGGGGUG-----------CUCC-GGCuCCA---------------GCGCG- -5'
5384 3' -64.6 NC_001798.1 + 110377 0.66 0.572119
Target:  5'- uGGCCCa---GGGGCCGGuGG-CGgGCa -3'
miRNA:   3'- gCCGGGggugCUCCGGCU-CCaGCgCG- -5'
5384 3' -64.6 NC_001798.1 + 153176 0.66 0.572119
Target:  5'- gGGgCUCCGCc-GGCCGAGGcCGCc- -3'
miRNA:   3'- gCCgGGGGUGcuCCGGCUCCaGCGcg -5'
5384 3' -64.6 NC_001798.1 + 28361 0.66 0.572119
Target:  5'- gCGGcCCCCCGCGuccccGcCCGcGGaCGCGCc -3'
miRNA:   3'- -GCC-GGGGGUGCuc---C-GGCuCCaGCGCG- -5'
5384 3' -64.6 NC_001798.1 + 39789 0.66 0.572119
Target:  5'- uGGUCCCgaggCGCGAccacacGCCGGuGGUCGCGg -3'
miRNA:   3'- gCCGGGG----GUGCUc-----CGGCU-CCAGCGCg -5'
5384 3' -64.6 NC_001798.1 + 109079 0.66 0.572119
Target:  5'- gGGCCCCgACGcccGCCGAcaacGGcUCgGCGCu -3'
miRNA:   3'- gCCGGGGgUGCuc-CGGCU----CC-AG-CGCG- -5'
5384 3' -64.6 NC_001798.1 + 92597 0.66 0.572119
Target:  5'- cCGGCCCUgcgaccuaaagCACGAGacgaCGGGGgaCGCGCu -3'
miRNA:   3'- -GCCGGGG-----------GUGCUCcg--GCUCCa-GCGCG- -5'
5384 3' -64.6 NC_001798.1 + 137143 0.66 0.572119
Target:  5'- -cGCCCCCugGGGGUgaCGucaaCGCGCa -3'
miRNA:   3'- gcCGGGGGugCUCCG--GCuccaGCGCG- -5'
5384 3' -64.6 NC_001798.1 + 135293 0.66 0.571176
Target:  5'- -cGCCCCCuCGgagcccuGGGCCcGGGcCGUGCu -3'
miRNA:   3'- gcCGGGGGuGC-------UCCGGcUCCaGCGCG- -5'
5384 3' -64.6 NC_001798.1 + 86065 0.66 0.566465
Target:  5'- cCGGCaCCCCcgccgucugggaguCGGGGCCccGGcugCGCGCc -3'
miRNA:   3'- -GCCG-GGGGu-------------GCUCCGGcuCCa--GCGCG- -5'
5384 3' -64.6 NC_001798.1 + 63182 0.66 0.562704
Target:  5'- aCGGCCCCgGCGua--CGAGGUgcUGCGg -3'
miRNA:   3'- -GCCGGGGgUGCuccgGCUCCA--GCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.