miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5384 5' -58.1 NC_001798.1 + 110909 0.66 0.80171
Target:  5'- cGUGCG-GCCAGCCGCccccgcCGGCccgCGGUc -3'
miRNA:   3'- -CACGCgUGGUCGGCGaa----GCCGa--GUUA- -5'
5384 5' -58.1 NC_001798.1 + 2194 0.66 0.80171
Target:  5'- -gGCGCAUCcaGGCCGCcgcgCGGCgCAGc -3'
miRNA:   3'- caCGCGUGG--UCGGCGaa--GCCGaGUUa -5'
5384 5' -58.1 NC_001798.1 + 54676 0.66 0.792652
Target:  5'- -gGCGCGC---CCGCUcgCGGCUCAGc -3'
miRNA:   3'- caCGCGUGgucGGCGAa-GCCGAGUUa -5'
5384 5' -58.1 NC_001798.1 + 138629 0.66 0.792652
Target:  5'- -cGCGCACCAGCCaCUcccccCGGCg---- -3'
miRNA:   3'- caCGCGUGGUCGGcGAa----GCCGaguua -5'
5384 5' -58.1 NC_001798.1 + 3423 0.66 0.783448
Target:  5'- -cGCGCGCCAGCaggggCGCguaggcgCGGCgCAGg -3'
miRNA:   3'- caCGCGUGGUCG-----GCGaa-----GCCGaGUUa -5'
5384 5' -58.1 NC_001798.1 + 122449 0.66 0.774106
Target:  5'- cGUGCGCccccACCAGCUGUcccccgCGGCcCAGa -3'
miRNA:   3'- -CACGCG----UGGUCGGCGaa----GCCGaGUUa -5'
5384 5' -58.1 NC_001798.1 + 133054 0.66 0.768438
Target:  5'- aUGCGCGgccucaacagccuggUCGGCCGCacgCGGUUCAu- -3'
miRNA:   3'- cACGCGU---------------GGUCGGCGaa-GCCGAGUua -5'
5384 5' -58.1 NC_001798.1 + 72925 0.66 0.764635
Target:  5'- -cGCGCGCUggucguGGCgCGCUUCGccaGCUCGGc -3'
miRNA:   3'- caCGCGUGG------UCG-GCGAAGC---CGAGUUa -5'
5384 5' -58.1 NC_001798.1 + 25268 0.66 0.764635
Target:  5'- -gGCGcCGCCAGCCGCcggGGCcCAGc -3'
miRNA:   3'- caCGC-GUGGUCGGCGaagCCGaGUUa -5'
5384 5' -58.1 NC_001798.1 + 150382 0.67 0.715684
Target:  5'- -gGCGCGggcCCGGCCGCgucCGcGCUCGc- -3'
miRNA:   3'- caCGCGU---GGUCGGCGaa-GC-CGAGUua -5'
5384 5' -58.1 NC_001798.1 + 132484 0.67 0.695532
Target:  5'- -cGUGUACCAGUCGCUggGGCg---- -3'
miRNA:   3'- caCGCGUGGUCGGCGAagCCGaguua -5'
5384 5' -58.1 NC_001798.1 + 3142 0.67 0.691473
Target:  5'- -cGCGCGCCGGCCGCcgccaccaccgcCGGCg---- -3'
miRNA:   3'- caCGCGUGGUCGGCGaa----------GCCGaguua -5'
5384 5' -58.1 NC_001798.1 + 78252 0.68 0.68537
Target:  5'- -cGUGCACCGGgCGCU-CGGCg---- -3'
miRNA:   3'- caCGCGUGGUCgGCGAaGCCGaguua -5'
5384 5' -58.1 NC_001798.1 + 88760 0.68 0.664923
Target:  5'- -cGCGCauGCCGGCCGCcuccggaaagUCGGC-CAGc -3'
miRNA:   3'- caCGCG--UGGUCGGCGa---------AGCCGaGUUa -5'
5384 5' -58.1 NC_001798.1 + 31707 0.68 0.662871
Target:  5'- -cGCGCGCCccGGUCGCgcaugacccaGGCUCAGa -3'
miRNA:   3'- caCGCGUGG--UCGGCGaag-------CCGAGUUa -5'
5384 5' -58.1 NC_001798.1 + 103013 0.69 0.634072
Target:  5'- gGUGCGC-CCGGCCaGCgcgagcUCGGcCUCGGc -3'
miRNA:   3'- -CACGCGuGGUCGG-CGa-----AGCC-GAGUUa -5'
5384 5' -58.1 NC_001798.1 + 133026 0.69 0.613483
Target:  5'- -cGuCGCGCCGGCCGagguggUCGcGCUCAu- -3'
miRNA:   3'- caC-GCGUGGUCGGCga----AGC-CGAGUua -5'
5384 5' -58.1 NC_001798.1 + 24764 0.69 0.603206
Target:  5'- cUGCGCGCCuGGCUGCgcgagcugCGGUUCGu- -3'
miRNA:   3'- cACGCGUGG-UCGGCGaa------GCCGAGUua -5'
5384 5' -58.1 NC_001798.1 + 2509 0.7 0.542245
Target:  5'- -gGCGCGgCGGCCGCggCGGCg---- -3'
miRNA:   3'- caCGCGUgGUCGGCGaaGCCGaguua -5'
5384 5' -58.1 NC_001798.1 + 43823 0.7 0.522348
Target:  5'- -aGCGCGCCGGUcuCGCguacgUCGGCggCGAUg -3'
miRNA:   3'- caCGCGUGGUCG--GCGa----AGCCGa-GUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.