miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5385 3' -64.3 NC_001798.1 + 85503 0.66 0.558661
Target:  5'- cGCGccCCACUGCGCCGcgagcaucuucguGGCCGCc -3'
miRNA:   3'- aCGCccGGUGGCGCGGUau-----------CCGGCGc -5'
5385 3' -64.3 NC_001798.1 + 69802 0.66 0.554851
Target:  5'- --aGGGCCuguuggGCCGCcCCAcggaacGGCCGCGa -3'
miRNA:   3'- acgCCCGG------UGGCGcGGUau----CCGGCGC- -5'
5385 3' -64.3 NC_001798.1 + 74854 0.66 0.554851
Target:  5'- cUGCGGGUCcuggagguggggGCaGUGCCgGUGGGUCGCc -3'
miRNA:   3'- -ACGCCCGG------------UGgCGCGG-UAUCCGGCGc -5'
5385 3' -64.3 NC_001798.1 + 110292 0.66 0.554851
Target:  5'- gUGgGGGCCGuguuuCUGCGCUAcaccccGGCCGgGg -3'
miRNA:   3'- -ACgCCCGGU-----GGCGCGGUau----CCGGCgC- -5'
5385 3' -64.3 NC_001798.1 + 2449 0.66 0.554851
Target:  5'- gGCGGcGCCAgCCGC-CCugcGGGUCGgGg -3'
miRNA:   3'- aCGCC-CGGU-GGCGcGGua-UCCGGCgC- -5'
5385 3' -64.3 NC_001798.1 + 2509 0.66 0.554851
Target:  5'- gGCGcGGCgGCCGCGgCGgcGGCgucgGCGg -3'
miRNA:   3'- aCGC-CCGgUGGCGCgGUauCCGg---CGC- -5'
5385 3' -64.3 NC_001798.1 + 27934 0.66 0.554851
Target:  5'- cGCcgGGGUC-CCgGCGCC---GGCCGCGc -3'
miRNA:   3'- aCG--CCCGGuGG-CGCGGuauCCGGCGC- -5'
5385 3' -64.3 NC_001798.1 + 31664 0.66 0.554851
Target:  5'- cGC-GGCCGggcCCGCGCCGcccGCCGUGc -3'
miRNA:   3'- aCGcCCGGU---GGCGCGGUaucCGGCGC- -5'
5385 3' -64.3 NC_001798.1 + 66043 0.66 0.554851
Target:  5'- cGCGGGUCGCCcggcaCGCCAgaaacccGGCgaUGCGg -3'
miRNA:   3'- aCGCCCGGUGGc----GCGGUau-----CCG--GCGC- -5'
5385 3' -64.3 NC_001798.1 + 79966 0.66 0.554851
Target:  5'- aGCGGcGgCGCCGCGUCc---GCCGCc -3'
miRNA:   3'- aCGCC-CgGUGGCGCGGuaucCGGCGc -5'
5385 3' -64.3 NC_001798.1 + 80949 0.66 0.554851
Target:  5'- cGaCGGGCCcCCGUGCCu--GGUccuCGUGg -3'
miRNA:   3'- aC-GCCCGGuGGCGCGGuauCCG---GCGC- -5'
5385 3' -64.3 NC_001798.1 + 103467 0.66 0.554851
Target:  5'- gGCaGGGCCGCaCGCaCCGUgucuggguccaGGGCCaGCu -3'
miRNA:   3'- aCG-CCCGGUG-GCGcGGUA-----------UCCGG-CGc -5'
5385 3' -64.3 NC_001798.1 + 14801 0.66 0.554851
Target:  5'- cGCGuaUCGCCuGCGCCccgcccGGCCGCGc -3'
miRNA:   3'- aCGCccGGUGG-CGCGGuau---CCGGCGC- -5'
5385 3' -64.3 NC_001798.1 + 53067 0.66 0.5539
Target:  5'- gGCgGGGCCcCCGaccgaacggucucCGCCAUgcaacgccGGGCgCGCGg -3'
miRNA:   3'- aCG-CCCGGuGGC-------------GCGGUA--------UCCG-GCGC- -5'
5385 3' -64.3 NC_001798.1 + 1836 0.66 0.546308
Target:  5'- gGCGGGCCAguccgcggCGCGCaCGgcguugacgacgaugAGGCgGCGg -3'
miRNA:   3'- aCGCCCGGUg-------GCGCG-GUa--------------UCCGgCGC- -5'
5385 3' -64.3 NC_001798.1 + 58100 0.66 0.545361
Target:  5'- cGCaGGGUCGCgGcCGCCcaGGGCCcgGCGu -3'
miRNA:   3'- aCG-CCCGGUGgC-GCGGuaUCCGG--CGC- -5'
5385 3' -64.3 NC_001798.1 + 39642 0.66 0.545361
Target:  5'- gUGUGGaGUCGgCGcCGCCG-GGGCCGUa -3'
miRNA:   3'- -ACGCC-CGGUgGC-GCGGUaUCCGGCGc -5'
5385 3' -64.3 NC_001798.1 + 150621 0.66 0.545361
Target:  5'- gGgGGGCUccuggGCCGCGCg--GGGCUGUc -3'
miRNA:   3'- aCgCCCGG-----UGGCGCGguaUCCGGCGc -5'
5385 3' -64.3 NC_001798.1 + 135439 0.66 0.545361
Target:  5'- uUGCGGuCUGCgGCGgCAccgGGGCUGCGu -3'
miRNA:   3'- -ACGCCcGGUGgCGCgGUa--UCCGGCGC- -5'
5385 3' -64.3 NC_001798.1 + 81055 0.66 0.544415
Target:  5'- aGCGaGGCCACCGaggaGCUuccguuuGUGGcuaCCGCGg -3'
miRNA:   3'- aCGC-CCGGUGGCg---CGG-------UAUCc--GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.