miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5385 5' -54.7 NC_001798.1 + 143783 0.66 0.930053
Target:  5'- gGGCAUGGGCGCCccagAGCauaaaGAccaGGCCCGGg -3'
miRNA:   3'- -UUGUGCUUGCGG----UCGa----CUa--UCGGGUC- -5'
5385 5' -54.7 NC_001798.1 + 115141 0.66 0.930053
Target:  5'- cGCGCGuGCGCgCGGauCUGGUGGCCaUAGg -3'
miRNA:   3'- uUGUGCuUGCG-GUC--GACUAUCGG-GUC- -5'
5385 5' -54.7 NC_001798.1 + 94577 0.66 0.930053
Target:  5'- aGGCGCGGGuCGCCAGCcuccaGAgcGCCUAc -3'
miRNA:   3'- -UUGUGCUU-GCGGUCGa----CUauCGGGUc -5'
5385 5' -54.7 NC_001798.1 + 34035 0.66 0.930053
Target:  5'- gGGgACGGGCGCCacacccacGGCUG-UGGCCgGGc -3'
miRNA:   3'- -UUgUGCUUGCGG--------UCGACuAUCGGgUC- -5'
5385 5' -54.7 NC_001798.1 + 109305 0.66 0.930053
Target:  5'- cGACGCGAuuCGCCucuccgaccuGCUGGgcuuuuUGGCCCAc -3'
miRNA:   3'- -UUGUGCUu-GCGGu---------CGACU------AUCGGGUc -5'
5385 5' -54.7 NC_001798.1 + 153687 0.66 0.924621
Target:  5'- gGACGCGGGggccgcCGCCGGCgca-GGCUCAGg -3'
miRNA:   3'- -UUGUGCUU------GCGGUCGacuaUCGGGUC- -5'
5385 5' -54.7 NC_001798.1 + 149993 0.66 0.924621
Target:  5'- -cCGCGGACGCCggGGCgagcGGCCCGu -3'
miRNA:   3'- uuGUGCUUGCGG--UCGacuaUCGGGUc -5'
5385 5' -54.7 NC_001798.1 + 109106 0.66 0.924621
Target:  5'- cGGCGCuGGACGCCcuccGGCgGGUGGCCg-- -3'
miRNA:   3'- -UUGUG-CUUGCGG----UCGaCUAUCGGguc -5'
5385 5' -54.7 NC_001798.1 + 79046 0.66 0.924621
Target:  5'- cAACACGGuguCGg-GGCUGcgGGCCCAGc -3'
miRNA:   3'- -UUGUGCUu--GCggUCGACuaUCGGGUC- -5'
5385 5' -54.7 NC_001798.1 + 32357 0.66 0.924621
Target:  5'- cACGCGGAgGgCGGCcccgAGCCCGGg -3'
miRNA:   3'- uUGUGCUUgCgGUCGacuaUCGGGUC- -5'
5385 5' -54.7 NC_001798.1 + 113824 0.66 0.913002
Target:  5'- gGACAgaGGACGCCGGCcGGUccucgGGCCUAc -3'
miRNA:   3'- -UUGUg-CUUGCGGUCGaCUA-----UCGGGUc -5'
5385 5' -54.7 NC_001798.1 + 9982 0.66 0.913002
Target:  5'- --uGCGGAcCGCCAgGC-GGUAcGCCCAGg -3'
miRNA:   3'- uugUGCUU-GCGGU-CGaCUAU-CGGGUC- -5'
5385 5' -54.7 NC_001798.1 + 24795 0.66 0.913002
Target:  5'- uGCGCGAcGCGCUgguGCUGAUGcGCCUg- -3'
miRNA:   3'- uUGUGCU-UGCGGu--CGACUAU-CGGGuc -5'
5385 5' -54.7 NC_001798.1 + 52016 0.66 0.913002
Target:  5'- cGCugGggUcCCuGCUGuacUGGCCCGGg -3'
miRNA:   3'- uUGugCuuGcGGuCGACu--AUCGGGUC- -5'
5385 5' -54.7 NC_001798.1 + 25263 0.66 0.913002
Target:  5'- cGGCugGcgcCGCCAGCcGccggGGCCCAGc -3'
miRNA:   3'- -UUGugCuu-GCGGUCGaCua--UCGGGUC- -5'
5385 5' -54.7 NC_001798.1 + 76760 0.66 0.913002
Target:  5'- cGCGCGGgagcGCGCCAa--GGUGGCCCAc -3'
miRNA:   3'- uUGUGCU----UGCGGUcgaCUAUCGGGUc -5'
5385 5' -54.7 NC_001798.1 + 142329 0.66 0.906818
Target:  5'- aGGCugGAGCGCUGGUgGGacGCCCAu -3'
miRNA:   3'- -UUGugCUUGCGGUCGaCUauCGGGUc -5'
5385 5' -54.7 NC_001798.1 + 109349 0.66 0.906818
Target:  5'- cGCGCGuGCugGCCGGcCUGGccGCCCGGg -3'
miRNA:   3'- uUGUGCuUG--CGGUC-GACUauCGGGUC- -5'
5385 5' -54.7 NC_001798.1 + 26396 0.67 0.900387
Target:  5'- cGCGCGGGCGCU-GCUcg-AGCCCGa -3'
miRNA:   3'- uUGUGCUUGCGGuCGAcuaUCGGGUc -5'
5385 5' -54.7 NC_001798.1 + 72310 0.67 0.900387
Target:  5'- cAGCAUGuACGCC--CUGGcGGCCCGGg -3'
miRNA:   3'- -UUGUGCuUGCGGucGACUaUCGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.