miRNA display CGI


Results 1 - 20 of 220 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 82149 0.66 0.403519
Target:  5'- uCUCCCCGGgacccagccgaccacGCGGCCGcGGUuuccgccgcagCGG-CGGCa -3'
miRNA:   3'- -GAGGGGCC---------------CGCCGGU-CCG-----------GCCgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 86434 0.66 0.400361
Target:  5'- -aCCCCGaGGCGcaGCCcggggacggGGGCCGGUUcgugAGCc -3'
miRNA:   3'- gaGGGGC-CCGC--CGG---------UCCGGCCGG----UCG- -5'
5386 3' -68.2 NC_001798.1 + 24401 0.66 0.400361
Target:  5'- -gCCCCGuugccgucggcGGCGGCgucGCCGGCCgacgAGCg -3'
miRNA:   3'- gaGGGGC-----------CCGCCGgucCGGCCGG----UCG- -5'
5386 3' -68.2 NC_001798.1 + 59467 0.66 0.400361
Target:  5'- -gCCCgGGcGCGGUgAGGCguuCGGCCAc- -3'
miRNA:   3'- gaGGGgCC-CGCCGgUCCG---GCCGGUcg -5'
5386 3' -68.2 NC_001798.1 + 52782 0.66 0.400361
Target:  5'- -gCCCCGGGCGcCCGuGaGCgGGaCGGCa -3'
miRNA:   3'- gaGGGGCCCGCcGGU-C-CGgCCgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 18828 0.66 0.400361
Target:  5'- -aCCCCGGuGgugguucgccCGGCgaaccuucgCAGGCUGGCCgAGCc -3'
miRNA:   3'- gaGGGGCC-C----------GCCG---------GUCCGGCCGG-UCG- -5'
5386 3' -68.2 NC_001798.1 + 70558 0.66 0.399574
Target:  5'- -gCCgCCGGGCugcgcaccacggcGGCCcugGGGCCGgugcgcguccGCCAGUg -3'
miRNA:   3'- gaGG-GGCCCG-------------CCGG---UCCGGC----------CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 73244 0.66 0.399574
Target:  5'- --gCCCGGG-GGCCcccggggaccuggAGGCCcaagauGCCGGCg -3'
miRNA:   3'- gagGGGCCCgCCGG-------------UCCGGc-----CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 91605 0.66 0.395653
Target:  5'- -gCCCggcaggccgcgcuuaUGGGCGGCC-GGCCGcCCGGg -3'
miRNA:   3'- gaGGG---------------GCCCGCCGGuCCGGCcGGUCg -5'
5386 3' -68.2 NC_001798.1 + 15277 0.66 0.392535
Target:  5'- -gCCCCGGGUuccgGGCguGGCggUGGUCgcGGCg -3'
miRNA:   3'- gaGGGGCCCG----CCGguCCG--GCCGG--UCG- -5'
5386 3' -68.2 NC_001798.1 + 34793 0.66 0.392535
Target:  5'- -gCCgCCGGcGCGGCCcgGGGCCccggGGCCcccGCn -3'
miRNA:   3'- gaGG-GGCC-CGCCGG--UCCGG----CCGGu--CG- -5'
5386 3' -68.2 NC_001798.1 + 121839 0.66 0.392535
Target:  5'- uCUCCCCGGaGgagcagcucaCGGCCccgggAGGCgacaCGGCCAccGCg -3'
miRNA:   3'- -GAGGGGCC-C----------GCCGG-----UCCG----GCCGGU--CG- -5'
5386 3' -68.2 NC_001798.1 + 148674 0.66 0.392535
Target:  5'- -aCCCCcaG-GGUCuGGCCGGCCAGa -3'
miRNA:   3'- gaGGGGccCgCCGGuCCGGCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 25813 0.66 0.392535
Target:  5'- uUCCUgGGGCuGCU-GGCCGGCgccuGCg -3'
miRNA:   3'- gAGGGgCCCGcCGGuCCGGCCGgu--CG- -5'
5386 3' -68.2 NC_001798.1 + 25942 0.66 0.392535
Target:  5'- -cCCgCCGGcaGUGcGCCGuGcGCUGGCCGGCg -3'
miRNA:   3'- gaGG-GGCC--CGC-CGGU-C-CGGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 96661 0.66 0.392535
Target:  5'- -cCCCCGaGCGgcGCCAcGGCCGcGCUggAGCg -3'
miRNA:   3'- gaGGGGCcCGC--CGGU-CCGGC-CGG--UCG- -5'
5386 3' -68.2 NC_001798.1 + 105403 0.66 0.392535
Target:  5'- uUCUCCaGGGCcGCCGcGGCCgcggugcgcugGGCCuGCa -3'
miRNA:   3'- gAGGGG-CCCGcCGGU-CCGG-----------CCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 70425 0.66 0.392535
Target:  5'- cCUCCCCGGGCuGCUGGuGCaccgcauGGCgguGGCg -3'
miRNA:   3'- -GAGGGGCCCGcCGGUC-CGg------CCGg--UCG- -5'
5386 3' -68.2 NC_001798.1 + 133931 0.66 0.392535
Target:  5'- -cCCCCGGGCGuCguGGCaUGGaagcccCCGGCa -3'
miRNA:   3'- gaGGGGCCCGCcGguCCG-GCC------GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 2554 0.66 0.391757
Target:  5'- -cCCCCgcgggagGGGCGGCCgcGGGgCGGggGGCg -3'
miRNA:   3'- gaGGGG-------CCCGCCGG--UCCgGCCggUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.