miRNA display CGI


Results 61 - 80 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 30432 0.67 0.31993
Target:  5'- -cCCCCGGccCGGCCcccGGCCGagcGCCAGg -3'
miRNA:   3'- gaGGGGCCc-GCCGGu--CCGGC---CGGUCg -5'
5386 3' -68.2 NC_001798.1 + 6373 0.67 0.31993
Target:  5'- ---gCCGGGgGGCCgggGGGCCggggGGCCGGg -3'
miRNA:   3'- gaggGGCCCgCCGG---UCCGG----CCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 1355 0.67 0.31993
Target:  5'- gCUCCgCCGGGCcGCCGcGCaCGGCgucgcgcccCAGCg -3'
miRNA:   3'- -GAGG-GGCCCGcCGGUcCG-GCCG---------GUCG- -5'
5386 3' -68.2 NC_001798.1 + 122017 0.67 0.340611
Target:  5'- gCUCCgCCaGGGCGcccugguccaCCAGGCCG-UCAGCg -3'
miRNA:   3'- -GAGG-GG-CCCGCc---------GGUCCGGCcGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 25624 0.67 0.340611
Target:  5'- -cCCCCGGaGUGGUCc-GCCGaGCgCGGCg -3'
miRNA:   3'- gaGGGGCC-CGCCGGucCGGC-CG-GUCG- -5'
5386 3' -68.2 NC_001798.1 + 59929 0.67 0.340611
Target:  5'- --aCCCGGGCu-CC-GGCCGaGCCAGUu -3'
miRNA:   3'- gagGGGCCCGccGGuCCGGC-CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 153067 0.67 0.354926
Target:  5'- -cCCCCugGGGCGGgCGgagcGGCgGGgCGGCg -3'
miRNA:   3'- gaGGGG--CCCGCCgGU----CCGgCCgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 146304 0.67 0.354926
Target:  5'- ----gUGGGCGGCCGGGCgGGaggaUGGCg -3'
miRNA:   3'- gagggGCCCGCCGGUCCGgCCg---GUCG- -5'
5386 3' -68.2 NC_001798.1 + 74656 0.67 0.354926
Target:  5'- -cCCCCGGGgGGCCucGGGCCcaCCcgacacaccgcaGGCg -3'
miRNA:   3'- gaGGGGCCCgCCGG--UCCGGccGG------------UCG- -5'
5386 3' -68.2 NC_001798.1 + 25686 0.67 0.354926
Target:  5'- gCUCUgCGGGCccGCCAcGGCCgccugGGCgGGCa -3'
miRNA:   3'- -GAGGgGCCCGc-CGGU-CCGG-----CCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 11171 0.67 0.354926
Target:  5'- -aCCacgauggGGGCGGUgGGGCgGGCCuGCc -3'
miRNA:   3'- gaGGgg-----CCCGCCGgUCCGgCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 1142 0.67 0.354926
Target:  5'- -gCCUC-GGCGGCguGGCCaGCCccgcGGCg -3'
miRNA:   3'- gaGGGGcCCGCCGguCCGGcCGG----UCG- -5'
5386 3' -68.2 NC_001798.1 + 149156 0.67 0.347716
Target:  5'- -cCCCCGaGGC-GCCucGGCCGGugguCCGGUg -3'
miRNA:   3'- gaGGGGC-CCGcCGGu-CCGGCC----GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 153309 0.67 0.347716
Target:  5'- --gCCCGGGCucgGGCuCGGGCCcgagcucgGGCCucgGGCu -3'
miRNA:   3'- gagGGGCCCG---CCG-GUCCGG--------CCGG---UCG- -5'
5386 3' -68.2 NC_001798.1 + 59788 0.67 0.347716
Target:  5'- --aCgCGGGCGGuacCCGGGCCuGGCCcucgaGGCc -3'
miRNA:   3'- gagGgGCCCGCC---GGUCCGG-CCGG-----UCG- -5'
5386 3' -68.2 NC_001798.1 + 47241 0.67 0.347716
Target:  5'- gUCgUUGGGCGGCCc--CCGGCCuuuGCu -3'
miRNA:   3'- gAGgGGCCCGCCGGuccGGCCGGu--CG- -5'
5386 3' -68.2 NC_001798.1 + 25566 0.67 0.347716
Target:  5'- cCUCUacucgccgcugCCGGGCgaggaccuGGCCgcGGGCCGcGCCGGg -3'
miRNA:   3'- -GAGG-----------GGCCCG--------CCGG--UCCGGC-CGGUCg -5'
5386 3' -68.2 NC_001798.1 + 19984 0.67 0.347716
Target:  5'- -cCCgCCGGacGCGGauuCCGGGuucucCCGGCCGGCc -3'
miRNA:   3'- gaGG-GGCC--CGCC---GGUCC-----GGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 18303 0.67 0.347716
Target:  5'- gCUCgCCGGGaaGGCCgGGGCCGuguuugucuCCGGCg -3'
miRNA:   3'- -GAGgGGCCCg-CCGG-UCCGGCc--------GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 88361 0.67 0.340611
Target:  5'- gUCCCuCGGGCaG--GGGUCGcGCCAGCc -3'
miRNA:   3'- gAGGG-GCCCGcCggUCCGGC-CGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.