miRNA display CGI


Results 81 - 100 of 220 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 25624 0.67 0.340611
Target:  5'- -cCCCCGGaGUGGUCc-GCCGaGCgCGGCg -3'
miRNA:   3'- gaGGGGCC-CGCCGGucCGGC-CG-GUCG- -5'
5386 3' -68.2 NC_001798.1 + 59929 0.67 0.340611
Target:  5'- --aCCCGGGCu-CC-GGCCGaGCCAGUu -3'
miRNA:   3'- gagGGGCCCGccGGuCCGGC-CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 88361 0.67 0.340611
Target:  5'- gUCCCuCGGGCaG--GGGUCGcGCCAGCc -3'
miRNA:   3'- gAGGG-GCCCGcCggUCCGGC-CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 18303 0.67 0.347716
Target:  5'- gCUCgCCGGGaaGGCCgGGGCCGuguuugucuCCGGCg -3'
miRNA:   3'- -GAGgGGCCCg-CCGG-UCCGGCc--------GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 19984 0.67 0.347716
Target:  5'- -cCCgCCGGacGCGGauuCCGGGuucucCCGGCCGGCc -3'
miRNA:   3'- gaGG-GGCC--CGCC---GGUCC-----GGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 25566 0.67 0.347716
Target:  5'- cCUCUacucgccgcugCCGGGCgaggaccuGGCCgcGGGCCGcGCCGGg -3'
miRNA:   3'- -GAGG-----------GGCCCG--------CCGG--UCCGGC-CGGUCg -5'
5386 3' -68.2 NC_001798.1 + 47241 0.67 0.347716
Target:  5'- gUCgUUGGGCGGCCc--CCGGCCuuuGCu -3'
miRNA:   3'- gAGgGGCCCGCCGGuccGGCCGGu--CG- -5'
5386 3' -68.2 NC_001798.1 + 151784 0.68 0.300206
Target:  5'- -cCCCCaGGCGuGCgGGG-CGGCgGGCu -3'
miRNA:   3'- gaGGGGcCCGC-CGgUCCgGCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 28855 0.68 0.300206
Target:  5'- --aCCggcgaGGGCGGCCucGGCCGGCgGaGCc -3'
miRNA:   3'- gagGGg----CCCGCCGGu-CCGGCCGgU-CG- -5'
5386 3' -68.2 NC_001798.1 + 4739 0.68 0.300206
Target:  5'- cCUCCCCGGaCGcCgGGGCCGccucGUCGGCa -3'
miRNA:   3'- -GAGGGGCCcGCcGgUCCGGC----CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 122060 0.68 0.299565
Target:  5'- -gCCCUGGGCGcGUCGGacgcggaggcgguGCUGGCgGGCc -3'
miRNA:   3'- gaGGGGCCCGC-CGGUC-------------CGGCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 4004 0.68 0.293213
Target:  5'- --gCCCGGccgugaaGCGGCCcguGGCgucgCGGCCGGCc -3'
miRNA:   3'- gagGGGCC-------CGCCGGu--CCG----GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 69996 0.68 0.306023
Target:  5'- gUCCCCGGGCGauacuuaGCCccuccguauAGGgCGG-CGGCa -3'
miRNA:   3'- gAGGGGCCCGC-------CGG---------UCCgGCCgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 76119 0.68 0.306023
Target:  5'- uUCCaCCGGG-GaGCCguauacagcgcgaAGGCCcugcaGGCCAGCg -3'
miRNA:   3'- gAGG-GGCCCgC-CGG-------------UCCGG-----CCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 25073 0.68 0.306674
Target:  5'- -gCCCCGcccCGGCCAGggcgccGCCGGgCGGCg -3'
miRNA:   3'- gaGGGGCcc-GCCGGUC------CGGCCgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 76032 0.68 0.306674
Target:  5'- -gCCCUGGGCcccgaGGCCauccAGGCgCGGCUGGa -3'
miRNA:   3'- gaGGGGCCCG-----CCGG----UCCG-GCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 134269 0.68 0.306674
Target:  5'- -gCCCUGGaGCGccagaCGGGCCGGUgGGCc -3'
miRNA:   3'- gaGGGGCC-CGCcg---GUCCGGCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 36544 0.68 0.306674
Target:  5'- --gCgCGcGGCGGCCGGGCgggggcgcgcggCGGCCGGg -3'
miRNA:   3'- gagGgGC-CCGCCGGUCCG------------GCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 36586 0.68 0.306674
Target:  5'- --gCgCGcGGCGGCCGGGCgggggcgcgcggCGGCCGGg -3'
miRNA:   3'- gagGgGC-CCGCCGGUCCG------------GCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 153171 0.68 0.293213
Target:  5'- -gCUCCGGGgcuccgcCGGCCgAGGCCGcccucGCCGGUu -3'
miRNA:   3'- gaGGGGCCC-------GCCGG-UCCGGC-----CGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.