miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 149232 0.75 0.09858
Target:  5'- aCUCCCCGuGGCccgcgggGGCgucGCCGGCCGGCg -3'
miRNA:   3'- -GAGGGGC-CCG-------CCGgucCGGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 34828 0.75 0.101257
Target:  5'- gCUCCgCCGGG-GGcCCGGGCCGGaCCgccgGGCg -3'
miRNA:   3'- -GAGG-GGCCCgCC-GGUCCGGCC-GG----UCG- -5'
5386 3' -68.2 NC_001798.1 + 102994 0.75 0.09644
Target:  5'- cCUCCacgCCGGG-GGcCCAGGugcgcCCGGCCAGCg -3'
miRNA:   3'- -GAGG---GGCCCgCC-GGUCC-----GGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 153034 0.74 0.114308
Target:  5'- -gCCCgCGcGGCGGCgCGcGGuuGGCCGGCg -3'
miRNA:   3'- gaGGG-GC-CCGCCG-GU-CCggCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 2668 0.74 0.1063
Target:  5'- cCUCCCgCGGcGCGGaggCGGGCgCGGCgAGCg -3'
miRNA:   3'- -GAGGG-GCC-CGCCg--GUCCG-GCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 128231 0.74 0.104509
Target:  5'- gCUCCCuCGucgugucgcuggaGGCGGCCggcaugguggaccgcGGGCuCGGCCGGCa -3'
miRNA:   3'- -GAGGG-GC-------------CCGCCGG---------------UCCG-GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 58405 0.74 0.10375
Target:  5'- -cCCUCGcGCGGCgCAGG-CGGCCAGCg -3'
miRNA:   3'- gaGGGGCcCGCCG-GUCCgGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 83845 0.74 0.1063
Target:  5'- gUCCCCguccGGGCGGCgCuGGCgGGCCcgaGGCg -3'
miRNA:   3'- gAGGGG----CCCGCCG-GuCCGgCCGG---UCG- -5'
5386 3' -68.2 NC_001798.1 + 30768 0.74 0.117101
Target:  5'- ---gCCGaGGCGGCCgugcGGGCCGGCaCGGCc -3'
miRNA:   3'- gaggGGC-CCGCCGG----UCCGGCCG-GUCG- -5'
5386 3' -68.2 NC_001798.1 + 104165 0.74 0.111578
Target:  5'- --gCCUGGGCGuCCAGGCacagggCGGCCAGCc -3'
miRNA:   3'- gagGGGCCCGCcGGUCCG------GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 88071 0.74 0.104763
Target:  5'- gUCCCCugGGGCGGCgGcgucuagcucgcggaGGgCGGCCAGCc -3'
miRNA:   3'- gAGGGG--CCCGCCGgU---------------CCgGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 1213 0.74 0.10375
Target:  5'- gUCCCCGcGCGGCCcgcGGCCGacgcCCAGCg -3'
miRNA:   3'- gAGGGGCcCGCCGGu--CCGGCc---GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 36503 0.74 0.119957
Target:  5'- --aCgCGGGCGGCCGGGCgggggcgcgcggCGGCCGGg -3'
miRNA:   3'- gagGgGCCCGCCGGUCCG------------GCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 3888 0.74 0.1063
Target:  5'- -gCCCCGGG-GGCgggGGGCCGGCCccgGGCc -3'
miRNA:   3'- gaGGGGCCCgCCGg--UCCGGCCGG---UCG- -5'
5386 3' -68.2 NC_001798.1 + 98625 0.74 0.117101
Target:  5'- -gCCUCGGGCGGCguGGCCGcGaCCGucGCg -3'
miRNA:   3'- gaGGGGCCCGCCGguCCGGC-C-GGU--CG- -5'
5386 3' -68.2 NC_001798.1 + 25253 0.73 0.138494
Target:  5'- -aCCCgcaGGGCGGCUGGcGCCG-CCAGCc -3'
miRNA:   3'- gaGGGg--CCCGCCGGUC-CGGCcGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 102535 0.73 0.141829
Target:  5'- gUCCCCGcGGcCGG-CAGGCCgcacgcGGUCAGCg -3'
miRNA:   3'- gAGGGGC-CC-GCCgGUCCGG------CCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 143814 0.73 0.13204
Target:  5'- --gCCCGGGCGGC---GCgCGGCCAGCc -3'
miRNA:   3'- gagGGGCCCGCCGgucCG-GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 2010 0.73 0.125864
Target:  5'- --gCCCaGGCGGCCGuGGCgGGCCcGCa -3'
miRNA:   3'- gagGGGcCCGCCGGU-CCGgCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 132125 0.73 0.125864
Target:  5'- gUCCUgCaGGCGGCCcugcgccgccggGGGCCGGCgGGCg -3'
miRNA:   3'- gAGGG-GcCCGCCGG------------UCCGGCCGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.