miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 102535 0.73 0.141829
Target:  5'- gUCCCCGcGGcCGG-CAGGCCgcacgcGGUCAGCg -3'
miRNA:   3'- gAGGGGC-CC-GCCgGUCCGG------CCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 2109 0.72 0.163038
Target:  5'- -cCCCCGGcGCGGCCcgcGGCCaGGuccucgcCCGGCa -3'
miRNA:   3'- gaGGGGCC-CGCCGGu--CCGG-CC-------GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 9608 0.72 0.144893
Target:  5'- -gCCCgaGGGCGGCCagcaacaGGGCCGcccCCAGCa -3'
miRNA:   3'- gaGGGg-CCCGCCGG-------UCCGGCc--GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 1697 0.72 0.148719
Target:  5'- -cCCCCGGcccgaacacGCGGCCGGa--GGCCAGCa -3'
miRNA:   3'- gaGGGGCC---------CGCCGGUCcggCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 37401 0.72 0.148719
Target:  5'- -gCCaCCGGGCGGguCCgugGGGCCGGCCGa- -3'
miRNA:   3'- gaGG-GGCCCGCC--GG---UCCGGCCGGUcg -5'
5386 3' -68.2 NC_001798.1 + 91354 0.72 0.145237
Target:  5'- -cCCCCGGGgGaaGCCGGGCC-GCCcGCg -3'
miRNA:   3'- gaGGGGCCCgC--CGGUCCGGcCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 111583 0.72 0.155913
Target:  5'- gCUCCCugagCGGGgGGCCcGGCgGGgCGGCc -3'
miRNA:   3'- -GAGGG----GCCCgCCGGuCCGgCCgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 127945 0.72 0.145237
Target:  5'- -gCCCCGGGCGaaaAGGcCCGGCCcGCg -3'
miRNA:   3'- gaGGGGCCCGCcggUCC-GGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 150363 0.72 0.159627
Target:  5'- gUCCaccggcacggCGGGCGGCgCGGGcCCGGCC-GCg -3'
miRNA:   3'- gAGGg---------GCCCGCCG-GUCC-GGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 32773 0.72 0.159627
Target:  5'- gUCUCgggagcaGGGCGcGCCcGcGCCGGCCGGCg -3'
miRNA:   3'- gAGGGg------CCCGC-CGGuC-CGGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 138727 0.72 0.163421
Target:  5'- -gCCCCGGGcCGGCgCGcuccgcGGCCccggcgaccguGGCCAGCu -3'
miRNA:   3'- gaGGGGCCC-GCCG-GU------CCGG-----------CCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 75457 0.72 0.155913
Target:  5'- --gCCgGGGUGGCCGGcCCGGCC-GCg -3'
miRNA:   3'- gagGGgCCCGCCGGUCcGGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 43004 0.71 0.179416
Target:  5'- -cCCCCGa-CGGCCAGGCCGcCCGGg -3'
miRNA:   3'- gaGGGGCccGCCGGUCCGGCcGGUCg -5'
5386 3' -68.2 NC_001798.1 + 31327 0.71 0.186626
Target:  5'- uUCCCCcugcggccggcgggGGGCGcGCgCAGGCgCGGCgGGUg -3'
miRNA:   3'- gAGGGG--------------CCCGC-CG-GUCCG-GCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 48119 0.71 0.19231
Target:  5'- -cCCCCGGGUGGCCGGGUucaacaagCGcGUCuucuGCg -3'
miRNA:   3'- gaGGGGCCCGCCGGUCCG--------GC-CGGu---CG- -5'
5386 3' -68.2 NC_001798.1 + 77018 0.71 0.171252
Target:  5'- -aCCCCGGauaccgcgaCGGCuCuGGCCGGCCuGCa -3'
miRNA:   3'- gaGGGGCCc--------GCCG-GuCCGGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 34880 0.71 0.19231
Target:  5'- -gCgCCGGGCGGCUacccGGGacccCCGGCCGGg -3'
miRNA:   3'- gaGgGGCCCGCCGG----UCC----GGCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 3234 0.71 0.19231
Target:  5'- -gCCCCaGGGCGGCgAGcacccccgcggcGCCGuaGCCGGCg -3'
miRNA:   3'- gaGGGG-CCCGCCGgUC------------CGGC--CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 26183 0.71 0.19231
Target:  5'- gCUCCCgGcgcuGGaCGGCCGGGCCGccGCCucgGGCg -3'
miRNA:   3'- -GAGGGgC----CC-GCCGGUCCGGC--CGG---UCG- -5'
5386 3' -68.2 NC_001798.1 + 35527 0.71 0.183627
Target:  5'- uCUCUCCGccGCGGCCGGcgcggggcguuGCCGGcCCGGCc -3'
miRNA:   3'- -GAGGGGCc-CGCCGGUC-----------CGGCC-GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.