miRNA display CGI


Results 61 - 80 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 48119 0.71 0.19231
Target:  5'- -cCCCCGGGUGGCCGGGUucaacaagCGcGUCuucuGCg -3'
miRNA:   3'- gaGGGGCCCGCCGGUCCG--------GC-CGGu---CG- -5'
5386 3' -68.2 NC_001798.1 + 23670 0.7 0.215604
Target:  5'- --gCCCGcGCGGCgGuGGCCGGCC-GCg -3'
miRNA:   3'- gagGGGCcCGCCGgU-CCGGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 6224 0.7 0.215604
Target:  5'- --aCCCGGGgGGCC-GGCCGGggggaCgGGCg -3'
miRNA:   3'- gagGGGCCCgCCGGuCCGGCC-----GgUCG- -5'
5386 3' -68.2 NC_001798.1 + 61840 0.7 0.215604
Target:  5'- -gCCCCGGG-GGaCCGGggaacgcgggccGCCGGcCCAGCc -3'
miRNA:   3'- gaGGGGCCCgCC-GGUC------------CGGCC-GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 59870 0.7 0.215604
Target:  5'- -gUCCUGGcuGUGGUCGGGCCGGCCcgagAGUc -3'
miRNA:   3'- gaGGGGCC--CGCCGGUCCGGCCGG----UCG- -5'
5386 3' -68.2 NC_001798.1 + 2437 0.7 0.201351
Target:  5'- -gCCCC-GGCGGCU-GGCgGcGCCAGCc -3'
miRNA:   3'- gaGGGGcCCGCCGGuCCGgC-CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 135025 0.7 0.206009
Target:  5'- -cCCCgCGGGCauggccGGCCGuGGCCucggaggcGGCCGGCc -3'
miRNA:   3'- gaGGG-GCCCG------CCGGU-CCGG--------CCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 112179 0.7 0.206009
Target:  5'- cCUCCCCcacGGGCcGCacgucccgCAGGCCGcGCUGGCg -3'
miRNA:   3'- -GAGGGG---CCCGcCG--------GUCCGGC-CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 4114 0.7 0.22558
Target:  5'- -gCCCUGGGCgGGCUcGGCCGG--GGCg -3'
miRNA:   3'- gaGGGGCCCG-CCGGuCCGGCCggUCG- -5'
5386 3' -68.2 NC_001798.1 + 58913 0.7 0.220046
Target:  5'- cCUCCCCGaGGCuccacagGGCCAcGGCCGcucccccgccGaCCAGCc -3'
miRNA:   3'- -GAGGGGC-CCG-------CCGGU-CCGGC----------C-GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 82002 0.7 0.220544
Target:  5'- gUCCCCGGGgGcgaccgccGCCGcGGCCGccGCCAGa -3'
miRNA:   3'- gAGGGGCCCgC--------CGGU-CCGGC--CGGUCg -5'
5386 3' -68.2 NC_001798.1 + 43039 0.7 0.220544
Target:  5'- -gCCCCGGGCGcaaaugcggcGCguGagccGCCGGCCgAGCg -3'
miRNA:   3'- gaGGGGCCCGC----------CGguC----CGGCCGG-UCG- -5'
5386 3' -68.2 NC_001798.1 + 23709 0.7 0.196785
Target:  5'- uUCacggCCGGGCGGCCccGGCgGGUCgAGCu -3'
miRNA:   3'- gAGg---GGCCCGCCGGu-CCGgCCGG-UCG- -5'
5386 3' -68.2 NC_001798.1 + 69132 0.7 0.196785
Target:  5'- -gCCCCaGGCcucGGCCAGucgcucggucuGCCGGCCGGg -3'
miRNA:   3'- gaGGGGcCCG---CCGGUC-----------CGGCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 102642 0.7 0.196785
Target:  5'- gUCgCCGGGCGGCggagGGGCCGG--GGCg -3'
miRNA:   3'- gAGgGGCCCGCCGg---UCCGGCCggUCG- -5'
5386 3' -68.2 NC_001798.1 + 153675 0.7 0.196785
Target:  5'- gUCCgCGGGCGGggaCgcggGGGCCGccGCCGGCg -3'
miRNA:   3'- gAGGgGCCCGCCg--G----UCCGGC--CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 135220 0.7 0.199972
Target:  5'- -gCCUCGGGgaGGCCGGGCUgccggaagcccgggGGCgGGCg -3'
miRNA:   3'- gaGGGGCCCg-CCGGUCCGG--------------CCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 68776 0.7 0.22558
Target:  5'- cCUgCCCGGGUGGCCGGuGUgugUGGCCu-- -3'
miRNA:   3'- -GAgGGGCCCGCCGGUC-CG---GCCGGucg -5'
5386 3' -68.2 NC_001798.1 + 135999 0.7 0.22558
Target:  5'- -gUCCCGGG-GGCgGGGaguCGGUCGGCg -3'
miRNA:   3'- gaGGGGCCCgCCGgUCCg--GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 116190 0.7 0.220544
Target:  5'- -gCCCggagcUGGGCGGgCAGGCUcaGGCCgAGCu -3'
miRNA:   3'- gaGGG-----GCCCGCCgGUCCGG--CCGG-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.