miRNA display CGI


Results 81 - 100 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 61887 0.7 0.201351
Target:  5'- -cCCUCGGGCGcGCCcucgaaGCCGGCCcuGCg -3'
miRNA:   3'- gaGGGGCCCGC-CGGuc----CGGCCGGu-CG- -5'
5386 3' -68.2 NC_001798.1 + 2437 0.7 0.201351
Target:  5'- -gCCCC-GGCGGCU-GGCgGcGCCAGCc -3'
miRNA:   3'- gaGGGGcCCGCCGGuCCGgC-CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 135220 0.7 0.199972
Target:  5'- -gCCUCGGGgaGGCCGGGCUgccggaagcccgggGGCgGGCg -3'
miRNA:   3'- gaGGGGCCCg-CCGGUCCGG--------------CCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 102642 0.7 0.196785
Target:  5'- gUCgCCGGGCGGCggagGGGCCGG--GGCg -3'
miRNA:   3'- gAGgGGCCCGCCGg---UCCGGCCggUCG- -5'
5386 3' -68.2 NC_001798.1 + 69132 0.7 0.196785
Target:  5'- -gCCCCaGGCcucGGCCAGucgcucggucuGCCGGCCGGg -3'
miRNA:   3'- gaGGGGcCCG---CCGGUC-----------CGGCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 4114 0.7 0.22558
Target:  5'- -gCCCUGGGCgGGCUcGGCCGG--GGCg -3'
miRNA:   3'- gaGGGGCCCG-CCGGuCCGGCCggUCG- -5'
5386 3' -68.2 NC_001798.1 + 95685 0.69 0.235945
Target:  5'- ---gCgGcGGCGGCgGGGgCGGCCGGCg -3'
miRNA:   3'- gaggGgC-CCGCCGgUCCgGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 3042 0.69 0.254478
Target:  5'- -nCCCCGgcacGGCcGCCAGGUCGccgucgaagcccuccGCCAGCg -3'
miRNA:   3'- gaGGGGC----CCGcCGGUCCGGC---------------CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 3444 0.69 0.230713
Target:  5'- -----aGGcGCGGCgCAGGCUGGUCAGCa -3'
miRNA:   3'- gaggggCC-CGCCG-GUCCGGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 2174 0.69 0.257303
Target:  5'- gUCCuCCGGGuCGGgcaccuggcgcauCCAGGCCGccGCgCGGCg -3'
miRNA:   3'- gAGG-GGCCC-GCC-------------GGUCCGGC--CG-GUCG- -5'
5386 3' -68.2 NC_001798.1 + 123385 0.69 0.230196
Target:  5'- gUCCCCaGGCGacGCCAGGCCccccgggagccgcGGCCccGCc -3'
miRNA:   3'- gAGGGGcCCGC--CGGUCCGG-------------CCGGu-CG- -5'
5386 3' -68.2 NC_001798.1 + 78843 0.69 0.230713
Target:  5'- -cCCCUGGcGCGGCac-GCCGGCC-GCc -3'
miRNA:   3'- gaGGGGCC-CGCCGgucCGGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 111011 0.69 0.230713
Target:  5'- aUgCgUGGccGCGGCCAGGCguccgUGGCCGGCg -3'
miRNA:   3'- gAgGgGCC--CGCCGGUCCG-----GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 154095 0.69 0.235945
Target:  5'- -gCgCCGGggcGCGGCCGGcGCCGGggaccCCGGCg -3'
miRNA:   3'- gaGgGGCC---CGCCGGUC-CGGCC-----GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 84505 0.69 0.252237
Target:  5'- -cCCCCGGGCGGCCgccguaGGGCUuccccauccccGCCAucGCg -3'
miRNA:   3'- gaGGGGCCCGCCGG------UCCGGc----------CGGU--CG- -5'
5386 3' -68.2 NC_001798.1 + 147198 0.69 0.235945
Target:  5'- -cCCCCGcccGGCGGUCcGGCCcgGGCCcccGGCg -3'
miRNA:   3'- gaGGGGC---CCGCCGGuCCGG--CCGG---UCG- -5'
5386 3' -68.2 NC_001798.1 + 120220 0.69 0.241275
Target:  5'- -gCCCCGGGCcguuGGCCcccGCCgaGGCCAGg -3'
miRNA:   3'- gaGGGGCCCG----CCGGuc-CGG--CCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 24674 0.69 0.235945
Target:  5'- gUgCCgGGGCuGGCCGGaGcCCGGCCcGCc -3'
miRNA:   3'- gAgGGgCCCG-CCGGUC-C-GGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 2398 0.69 0.230713
Target:  5'- cCUCCa-GGGCGGC--GGCCGagggcGCCGGCg -3'
miRNA:   3'- -GAGGggCCCGCCGguCCGGC-----CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 20279 0.69 0.257871
Target:  5'- -cCCCaCGuGcGCGGCCccAGGCgGGuCCGGCa -3'
miRNA:   3'- gaGGG-GC-C-CGCCGG--UCCGgCC-GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.