miRNA display CGI


Results 101 - 120 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 78843 0.69 0.230713
Target:  5'- -cCCCUGGcGCGGCac-GCCGGCC-GCc -3'
miRNA:   3'- gaGGGGCC-CGCCGgucCGGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 3444 0.69 0.230713
Target:  5'- -----aGGcGCGGCgCAGGCUGGUCAGCa -3'
miRNA:   3'- gaggggCC-CGCCG-GUCCGGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 111011 0.69 0.230713
Target:  5'- aUgCgUGGccGCGGCCAGGCguccgUGGCCGGCg -3'
miRNA:   3'- gAgGgGCC--CGCCGGUCCG-----GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 151599 0.69 0.230713
Target:  5'- -gCCCUGGcGCucGGCCggGGGCCGGgCCGGg -3'
miRNA:   3'- gaGGGGCC-CG--CCGG--UCCGGCC-GGUCg -5'
5386 3' -68.2 NC_001798.1 + 154095 0.69 0.235945
Target:  5'- -gCgCCGGggcGCGGCCGGcGCCGGggaccCCGGCg -3'
miRNA:   3'- gaGgGGCC---CGCCGGUC-CGGCC-----GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 147198 0.69 0.235945
Target:  5'- -cCCCCGcccGGCGGUCcGGCCcgGGCCcccGGCg -3'
miRNA:   3'- gaGGGGC---CCGCCGGuCCGG--CCGG---UCG- -5'
5386 3' -68.2 NC_001798.1 + 3197 0.69 0.241275
Target:  5'- -gCCCCGGcCGGCgCggAGGCgGGCgCGGCg -3'
miRNA:   3'- gaGGGGCCcGCCG-G--UCCGgCCG-GUCG- -5'
5386 3' -68.2 NC_001798.1 + 2398 0.69 0.230713
Target:  5'- cCUCCa-GGGCGGC--GGCCGagggcGCCGGCg -3'
miRNA:   3'- -GAGGggCCCGCCGguCCGGC-----CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 123385 0.69 0.230196
Target:  5'- gUCCCCaGGCGacGCCAGGCCccccgggagccgcGGCCccGCc -3'
miRNA:   3'- gAGGGGcCCGC--CGGUCCGG-------------CCGGu-CG- -5'
5386 3' -68.2 NC_001798.1 + 5612 0.68 0.269445
Target:  5'- gUCCgCGGGCGGCUccgccccaaaggGGGCgGGgCC-GCa -3'
miRNA:   3'- gAGGgGCCCGCCGG------------UCCGgCC-GGuCG- -5'
5386 3' -68.2 NC_001798.1 + 28985 0.68 0.269445
Target:  5'- -gCCCCaggGGGCGGC---GCCGGCCAaccGCg -3'
miRNA:   3'- gaGGGG---CCCGCCGgucCGGCCGGU---CG- -5'
5386 3' -68.2 NC_001798.1 + 4004 0.68 0.293213
Target:  5'- --gCCCGGccgugaaGCGGCCcguGGCgucgCGGCCGGCc -3'
miRNA:   3'- gagGGGCC-------CGCCGGu--CCG----GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 153171 0.68 0.293213
Target:  5'- -gCUCCGGGgcuccgcCGGCCgAGGCCGcccucGCCGGUu -3'
miRNA:   3'- gaGGGGCCC-------GCCGG-UCCGGC-----CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 82064 0.68 0.287586
Target:  5'- -cCCCCGGG--GCCccgcGGCCGGCCcaccccGGCg -3'
miRNA:   3'- gaGGGGCCCgcCGGu---CCGGCCGG------UCG- -5'
5386 3' -68.2 NC_001798.1 + 1729 0.68 0.287586
Target:  5'- ----aCGGuGCGGCgCAGgucccgcgccGCCGGCCAGCg -3'
miRNA:   3'- gagggGCC-CGCCG-GUC----------CGGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 53448 0.68 0.287586
Target:  5'- -cUgUCGGGCGGCCAGcugaGCCGcGCCAuccuaGCg -3'
miRNA:   3'- gaGgGGCCCGCCGGUC----CGGC-CGGU-----CG- -5'
5386 3' -68.2 NC_001798.1 + 4081 0.68 0.287586
Target:  5'- gUCgCCGcGGgGGuCCGGGCCggGGCgGGCu -3'
miRNA:   3'- gAGgGGC-CCgCC-GGUCCGG--CCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 68460 0.68 0.280825
Target:  5'- -aCCgCGGggauugcgagcucGCGGCCGGGaCGGCgAGCg -3'
miRNA:   3'- gaGGgGCC-------------CGCCGGUCCgGCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 124428 0.68 0.275388
Target:  5'- -gCCCCGcGGUcGCgCGGGCCguGGCCAGa -3'
miRNA:   3'- gaGGGGC-CCGcCG-GUCCGG--CCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 57461 0.68 0.275388
Target:  5'- -gUCuuGGGgGGCgGGGCCGGUuUGGCg -3'
miRNA:   3'- gaGGggCCCgCCGgUCCGGCCG-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.