miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 3003 0.82 0.026793
Target:  5'- -gCCCCGGGCgcgggggcgcggcgGGCCGGGCucCGGCCAGCc -3'
miRNA:   3'- gaGGGGCCCG--------------CCGGUCCG--GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 146477 0.8 0.038452
Target:  5'- -gCCgCGGGCuccggGGCCGGGCCGGgCCGGCa -3'
miRNA:   3'- gaGGgGCCCG-----CCGGUCCGGCC-GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 121790 0.79 0.045849
Target:  5'- -gUCUCGGGCggGGCCGGGCCGGCCguugucGGCa -3'
miRNA:   3'- gaGGGGCCCG--CCGGUCCGGCCGG------UCG- -5'
5386 3' -68.2 NC_001798.1 + 33268 0.78 0.056008
Target:  5'- gCUCCCUgucuugguGGGUGGgCGGGCUGGCUGGCg -3'
miRNA:   3'- -GAGGGG--------CCCGCCgGUCCGGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 124019 0.78 0.060356
Target:  5'- -cCCCCGGGCaGCCGGGCCcGCCAu- -3'
miRNA:   3'- gaGGGGCCCGcCGGUCCGGcCGGUcg -5'
5386 3' -68.2 NC_001798.1 + 54379 0.77 0.068338
Target:  5'- -cCCaCCGGGgGGCCGcGGCgCGGUCGGCg -3'
miRNA:   3'- gaGG-GGCCCgCCGGU-CCG-GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 29375 0.77 0.071807
Target:  5'- uUCCCCGGGggcgGGCaccacucaGGGCCGcGCCGGCg -3'
miRNA:   3'- gAGGGGCCCg---CCGg-------UCCGGC-CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 135764 0.76 0.073605
Target:  5'- aUCCUCcGGCGGCCGGccGCCGGCCcGCc -3'
miRNA:   3'- gAGGGGcCCGCCGGUC--CGGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 122816 0.76 0.075445
Target:  5'- --aUCUGGGCGGCCAGGgCGGUCGGg -3'
miRNA:   3'- gagGGGCCCGCCGGUCCgGCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 3095 0.76 0.07733
Target:  5'- aUCCCgCGgcaGGCGGCCAGGCacuccaCGGCCAcGCg -3'
miRNA:   3'- gAGGG-GC---CCGCCGGUCCG------GCCGGU-CG- -5'
5386 3' -68.2 NC_001798.1 + 147242 0.76 0.07926
Target:  5'- -gCCCCGGGgccCCGGGCCGcGCCGGCg -3'
miRNA:   3'- gaGGGGCCCgccGGUCCGGC-CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 109032 0.76 0.08533
Target:  5'- gCUCCCCGGGCcuCC-GGCCGGCCccaGGUa -3'
miRNA:   3'- -GAGGGGCCCGccGGuCCGGCCGG---UCG- -5'
5386 3' -68.2 NC_001798.1 + 135137 0.75 0.08962
Target:  5'- -cCCCCcGGCGGCCgucGGGCCGGUCuggacGGCg -3'
miRNA:   3'- gaGGGGcCCGCCGG---UCCGGCCGG-----UCG- -5'
5386 3' -68.2 NC_001798.1 + 2261 0.75 0.08962
Target:  5'- -gCCgCCGGGgGGCgGGGCggcgcagcgcgCGGCCAGCg -3'
miRNA:   3'- gaGG-GGCCCgCCGgUCCG-----------GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 96981 0.75 0.08962
Target:  5'- -aCCgcggCGGGCGGCgGGGCCagGGCCGGCc -3'
miRNA:   3'- gaGGg---GCCCGCCGgUCCGG--CCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 95004 0.75 0.094114
Target:  5'- -gCCCCgcaGGGCGGCgCGGGCCuggaGGCCGGg -3'
miRNA:   3'- gaGGGG---CCCGCCG-GUCCGG----CCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 105184 0.75 0.09644
Target:  5'- aUCUCCGcGGCGGCgGGGCCcgcGGUgGGCg -3'
miRNA:   3'- gAGGGGC-CCGCCGgUCCGG---CCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 47858 0.75 0.09644
Target:  5'- -cCCCCGGG-GGCCccgugGGcGCCGGCgGGCg -3'
miRNA:   3'- gaGGGGCCCgCCGG-----UC-CGGCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 102994 0.75 0.09644
Target:  5'- cCUCCacgCCGGG-GGcCCAGGugcgcCCGGCCAGCg -3'
miRNA:   3'- -GAGG---GGCCCgCC-GGUCC-----GGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 149232 0.75 0.09858
Target:  5'- aCUCCCCGuGGCccgcgggGGCgucGCCGGCCGGCg -3'
miRNA:   3'- -GAGGGGC-CCG-------CCGgucCGGCCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.