Results 61 - 80 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5386 | 3' | -68.2 | NC_001798.1 | + | 3234 | 0.71 | 0.19231 |
Target: 5'- -gCCCCaGGGCGGCgAGcacccccgcggcGCCGuaGCCGGCg -3' miRNA: 3'- gaGGGG-CCCGCCGgUC------------CGGC--CGGUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 102642 | 0.7 | 0.196785 |
Target: 5'- gUCgCCGGGCGGCggagGGGCCGG--GGCg -3' miRNA: 3'- gAGgGGCCCGCCGg---UCCGGCCggUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 153675 | 0.7 | 0.196785 |
Target: 5'- gUCCgCGGGCGGggaCgcggGGGCCGccGCCGGCg -3' miRNA: 3'- gAGGgGCCCGCCg--G----UCCGGC--CGGUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 69132 | 0.7 | 0.196785 |
Target: 5'- -gCCCCaGGCcucGGCCAGucgcucggucuGCCGGCCGGg -3' miRNA: 3'- gaGGGGcCCG---CCGGUC-----------CGGCCGGUCg -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 23709 | 0.7 | 0.196785 |
Target: 5'- uUCacggCCGGGCGGCCccGGCgGGUCgAGCu -3' miRNA: 3'- gAGg---GGCCCGCCGGu-CCGgCCGG-UCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 135220 | 0.7 | 0.199972 |
Target: 5'- -gCCUCGGGgaGGCCGGGCUgccggaagcccgggGGCgGGCg -3' miRNA: 3'- gaGGGGCCCg-CCGGUCCGG--------------CCGgUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 2437 | 0.7 | 0.201351 |
Target: 5'- -gCCCC-GGCGGCU-GGCgGcGCCAGCc -3' miRNA: 3'- gaGGGGcCCGCCGGuCCGgC-CGGUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 61887 | 0.7 | 0.201351 |
Target: 5'- -cCCUCGGGCGcGCCcucgaaGCCGGCCcuGCg -3' miRNA: 3'- gaGGGGCCCGC-CGGuc----CGGCCGGu-CG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 110896 | 0.7 | 0.206009 |
Target: 5'- --aCCCGGcgguucgcguGCGGCCAGccgcccccGCCGGCCcGCg -3' miRNA: 3'- gagGGGCC----------CGCCGGUC--------CGGCCGGuCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 135025 | 0.7 | 0.206009 |
Target: 5'- -cCCCgCGGGCauggccGGCCGuGGCCucggaggcGGCCGGCc -3' miRNA: 3'- gaGGG-GCCCG------CCGGU-CCGG--------CCGGUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 112179 | 0.7 | 0.206009 |
Target: 5'- cCUCCCCcacGGGCcGCacgucccgCAGGCCGcGCUGGCg -3' miRNA: 3'- -GAGGGG---CCCGcCG--------GUCCGGC-CGGUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 2462 | 0.7 | 0.21076 |
Target: 5'- -gCCCugCGGGUcggGGCCcucGGCgGGCCGGCg -3' miRNA: 3'- gaGGG--GCCCG---CCGGu--CCGgCCGGUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 59870 | 0.7 | 0.215604 |
Target: 5'- -gUCCUGGcuGUGGUCGGGCCGGCCcgagAGUc -3' miRNA: 3'- gaGGGGCC--CGCCGGUCCGGCCGG----UCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 61840 | 0.7 | 0.215604 |
Target: 5'- -gCCCCGGG-GGaCCGGggaacgcgggccGCCGGcCCAGCc -3' miRNA: 3'- gaGGGGCCCgCC-GGUC------------CGGCC-GGUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 6224 | 0.7 | 0.215604 |
Target: 5'- --aCCCGGGgGGCC-GGCCGGggggaCgGGCg -3' miRNA: 3'- gagGGGCCCgCCGGuCCGGCC-----GgUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 23670 | 0.7 | 0.215604 |
Target: 5'- --gCCCGcGCGGCgGuGGCCGGCC-GCg -3' miRNA: 3'- gagGGGCcCGCCGgU-CCGGCCGGuCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 58913 | 0.7 | 0.220046 |
Target: 5'- cCUCCCCGaGGCuccacagGGCCAcGGCCGcucccccgccGaCCAGCc -3' miRNA: 3'- -GAGGGGC-CCG-------CCGGU-CCGGC----------C-GGUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 82002 | 0.7 | 0.220544 |
Target: 5'- gUCCCCGGGgGcgaccgccGCCGcGGCCGccGCCAGa -3' miRNA: 3'- gAGGGGCCCgC--------CGGU-CCGGC--CGGUCg -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 43039 | 0.7 | 0.220544 |
Target: 5'- -gCCCCGGGCGcaaaugcggcGCguGagccGCCGGCCgAGCg -3' miRNA: 3'- gaGGGGCCCGC----------CGguC----CGGCCGG-UCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 62278 | 0.7 | 0.220544 |
Target: 5'- -cCCgCCGGGCGGCCcGGCgGG--AGCg -3' miRNA: 3'- gaGG-GGCCCGCCGGuCCGgCCggUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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