miRNA display CGI


Results 81 - 100 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 82002 0.7 0.220544
Target:  5'- gUCCCCGGGgGcgaccgccGCCGcGGCCGccGCCAGa -3'
miRNA:   3'- gAGGGGCCCgC--------CGGU-CCGGC--CGGUCg -5'
5386 3' -68.2 NC_001798.1 + 4114 0.7 0.22558
Target:  5'- -gCCCUGGGCgGGCUcGGCCGG--GGCg -3'
miRNA:   3'- gaGGGGCCCG-CCGGuCCGGCCggUCG- -5'
5386 3' -68.2 NC_001798.1 + 135999 0.7 0.22558
Target:  5'- -gUCCCGGG-GGCgGGGaguCGGUCGGCg -3'
miRNA:   3'- gaGGGGCCCgCCGgUCCg--GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 68776 0.7 0.22558
Target:  5'- cCUgCCCGGGUGGCCGGuGUgugUGGCCu-- -3'
miRNA:   3'- -GAgGGGCCCGCCGGUC-CG---GCCGGucg -5'
5386 3' -68.2 NC_001798.1 + 147905 0.7 0.22558
Target:  5'- gUUCCCGGGgGGgCAGGCgCgGGUCGGg -3'
miRNA:   3'- gAGGGGCCCgCCgGUCCG-G-CCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 154137 0.7 0.227622
Target:  5'- -cCCCggcggcgggacauggCGGGCGGCUGGGCuCGGCguaGGCc -3'
miRNA:   3'- gaGGG---------------GCCCGCCGGUCCG-GCCGg--UCG- -5'
5386 3' -68.2 NC_001798.1 + 123385 0.69 0.230196
Target:  5'- gUCCCCaGGCGacGCCAGGCCccccgggagccgcGGCCccGCc -3'
miRNA:   3'- gAGGGGcCCGC--CGGUCCGG-------------CCGGu-CG- -5'
5386 3' -68.2 NC_001798.1 + 2398 0.69 0.230713
Target:  5'- cCUCCa-GGGCGGC--GGCCGagggcGCCGGCg -3'
miRNA:   3'- -GAGGggCCCGCCGguCCGGC-----CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 111011 0.69 0.230713
Target:  5'- aUgCgUGGccGCGGCCAGGCguccgUGGCCGGCg -3'
miRNA:   3'- gAgGgGCC--CGCCGGUCCG-----GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 78843 0.69 0.230713
Target:  5'- -cCCCUGGcGCGGCac-GCCGGCC-GCc -3'
miRNA:   3'- gaGGGGCC-CGCCGgucCGGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 151599 0.69 0.230713
Target:  5'- -gCCCUGGcGCucGGCCggGGGCCGGgCCGGg -3'
miRNA:   3'- gaGGGGCC-CG--CCGG--UCCGGCC-GGUCg -5'
5386 3' -68.2 NC_001798.1 + 3444 0.69 0.230713
Target:  5'- -----aGGcGCGGCgCAGGCUGGUCAGCa -3'
miRNA:   3'- gaggggCC-CGCCG-GUCCGGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 147198 0.69 0.235945
Target:  5'- -cCCCCGcccGGCGGUCcGGCCcgGGCCcccGGCg -3'
miRNA:   3'- gaGGGGC---CCGCCGGuCCGG--CCGG---UCG- -5'
5386 3' -68.2 NC_001798.1 + 154095 0.69 0.235945
Target:  5'- -gCgCCGGggcGCGGCCGGcGCCGGggaccCCGGCg -3'
miRNA:   3'- gaGgGGCC---CGCCGGUC-CGGCC-----GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 95685 0.69 0.235945
Target:  5'- ---gCgGcGGCGGCgGGGgCGGCCGGCg -3'
miRNA:   3'- gaggGgC-CCGCCGgUCCgGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 24674 0.69 0.235945
Target:  5'- gUgCCgGGGCuGGCCGGaGcCCGGCCcGCc -3'
miRNA:   3'- gAgGGgCCCG-CCGGUC-C-GGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 54571 0.69 0.235945
Target:  5'- -gCCCUGcGcCGGCC-GGCCGGCCAcGUa -3'
miRNA:   3'- gaGGGGCcC-GCCGGuCCGGCCGGU-CG- -5'
5386 3' -68.2 NC_001798.1 + 3197 0.69 0.241275
Target:  5'- -gCCCCGGcCGGCgCggAGGCgGGCgCGGCg -3'
miRNA:   3'- gaGGGGCCcGCCG-G--UCCGgCCG-GUCG- -5'
5386 3' -68.2 NC_001798.1 + 120220 0.69 0.241275
Target:  5'- -gCCCCGGGCcguuGGCCcccGCCgaGGCCAGg -3'
miRNA:   3'- gaGGGGCCCG----CCGGuc-CGG--CCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 84505 0.69 0.252237
Target:  5'- -cCCCCGGGCGGCCgccguaGGGCUuccccauccccGCCAucGCg -3'
miRNA:   3'- gaGGGGCCCGCCGG------UCCGGc----------CGGU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.