Results 41 - 60 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5386 | 3' | -68.2 | NC_001798.1 | + | 86833 | 0.66 | 0.362241 |
Target: 5'- -gCUCCGGcuccCGGcCCGGGcCCGGCC-GCg -3' miRNA: 3'- gaGGGGCCc---GCC-GGUCC-GGCCGGuCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 2601 | 0.66 | 0.362241 |
Target: 5'- uUCUUCGGGgGGCgCGGggcGCCGcCCGGCg -3' miRNA: 3'- gAGGGGCCCgCCG-GUC---CGGCcGGUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 77699 | 0.66 | 0.362241 |
Target: 5'- -gCCCgGGGCagcagcgaGcGCUGGGCCG-CCGGCg -3' miRNA: 3'- gaGGGgCCCG--------C-CGGUCCGGCcGGUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 70 | 0.66 | 0.362241 |
Target: 5'- ----gCGGGCGGCgGcGGCgGGCgGGCg -3' miRNA: 3'- gagggGCCCGCCGgU-CCGgCCGgUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 75996 | 0.66 | 0.362241 |
Target: 5'- -gCCCCGGGC-GCCGgcGGCagGGCCccguGCc -3' miRNA: 3'- gaGGGGCCCGcCGGU--CCGg-CCGGu---CG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 154408 | 0.66 | 0.362241 |
Target: 5'- ----gCGGGCGGCgGcGGCgGGCgGGCg -3' miRNA: 3'- gagggGCCCGCCGgU-CCGgCCGgUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 74388 | 0.66 | 0.362241 |
Target: 5'- cCUCcggCCCGGG-GGCCGuGGC--GCCGGCg -3' miRNA: 3'- -GAG---GGGCCCgCCGGU-CCGgcCGGUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 22133 | 0.66 | 0.361505 |
Target: 5'- -gCCCCuuugGGGcCGGCgGgGGCCaacgggagcgcggGGCCGGCa -3' miRNA: 3'- gaGGGG----CCC-GCCGgU-CCGG-------------CCGGUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 116423 | 0.67 | 0.35784 |
Target: 5'- --gCCCGcGCGGCCGacgccgccgacgaccGGCCgcaccGGCCGGCc -3' miRNA: 3'- gagGGGCcCGCCGGU---------------CCGG-----CCGGUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 153067 | 0.67 | 0.354926 |
Target: 5'- -cCCCCugGGGCGGgCGgagcGGCgGGgCGGCg -3' miRNA: 3'- gaGGGG--CCCGCCgGU----CCGgCCgGUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 146304 | 0.67 | 0.354926 |
Target: 5'- ----gUGGGCGGCCGGGCgGGaggaUGGCg -3' miRNA: 3'- gagggGCCCGCCGGUCCGgCCg---GUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 74656 | 0.67 | 0.354926 |
Target: 5'- -cCCCCGGGgGGCCucGGGCCcaCCcgacacaccgcaGGCg -3' miRNA: 3'- gaGGGGCCCgCCGG--UCCGGccGG------------UCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 25686 | 0.67 | 0.354926 |
Target: 5'- gCUCUgCGGGCccGCCAcGGCCgccugGGCgGGCa -3' miRNA: 3'- -GAGGgGCCCGc-CGGU-CCGG-----CCGgUCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 11171 | 0.67 | 0.354926 |
Target: 5'- -aCCacgauggGGGCGGUgGGGCgGGCCuGCc -3' miRNA: 3'- gaGGgg-----CCCGCCGgUCCGgCCGGuCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 1142 | 0.67 | 0.354926 |
Target: 5'- -gCCUC-GGCGGCguGGCCaGCCccgcGGCg -3' miRNA: 3'- gaGGGGcCCGCCGguCCGGcCGG----UCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 25566 | 0.67 | 0.347716 |
Target: 5'- cCUCUacucgccgcugCCGGGCgaggaccuGGCCgcGGGCCGcGCCGGg -3' miRNA: 3'- -GAGG-----------GGCCCG--------CCGG--UCCGGC-CGGUCg -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 47241 | 0.67 | 0.347716 |
Target: 5'- gUCgUUGGGCGGCCc--CCGGCCuuuGCu -3' miRNA: 3'- gAGgGGCCCGCCGGuccGGCCGGu--CG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 59788 | 0.67 | 0.347716 |
Target: 5'- --aCgCGGGCGGuacCCGGGCCuGGCCcucgaGGCc -3' miRNA: 3'- gagGgGCCCGCC---GGUCCGG-CCGG-----UCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 153309 | 0.67 | 0.347716 |
Target: 5'- --gCCCGGGCucgGGCuCGGGCCcgagcucgGGCCucgGGCu -3' miRNA: 3'- gagGGGCCCG---CCG-GUCCGG--------CCGG---UCG- -5' |
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5386 | 3' | -68.2 | NC_001798.1 | + | 19984 | 0.67 | 0.347716 |
Target: 5'- -cCCgCCGGacGCGGauuCCGGGuucucCCGGCCGGCc -3' miRNA: 3'- gaGG-GGCC--CGCC---GGUCC-----GGCCGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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