miRNA display CGI


Results 61 - 80 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 153309 0.67 0.347716
Target:  5'- --gCCCGGGCucgGGCuCGGGCCcgagcucgGGCCucgGGCu -3'
miRNA:   3'- gagGGGCCCG---CCG-GUCCGG--------CCGG---UCG- -5'
5386 3' -68.2 NC_001798.1 + 149156 0.67 0.347716
Target:  5'- -cCCCCGaGGC-GCCucGGCCGGugguCCGGUg -3'
miRNA:   3'- gaGGGGC-CCGcCGGu-CCGGCC----GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 95565 0.67 0.340611
Target:  5'- -gCCCUGgaGGUGGCCcacgaggcggAGGCCcuGGUCAGCc -3'
miRNA:   3'- gaGGGGC--CCGCCGG----------UCCGG--CCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 13543 0.67 0.340611
Target:  5'- -aCCCCGGG-GG---GGUCGGUCAGCu -3'
miRNA:   3'- gaGGGGCCCgCCgguCCGGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 115730 0.67 0.340611
Target:  5'- gCUUCCC-GGCGGCgAaguccccccGGCCGGuCCGGg -3'
miRNA:   3'- -GAGGGGcCCGCCGgU---------CCGGCC-GGUCg -5'
5386 3' -68.2 NC_001798.1 + 122017 0.67 0.340611
Target:  5'- gCUCCgCCaGGGCGcccugguccaCCAGGCCG-UCAGCg -3'
miRNA:   3'- -GAGG-GG-CCCGCc---------GGUCCGGCcGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 25624 0.67 0.340611
Target:  5'- -cCCCCGGaGUGGUCc-GCCGaGCgCGGCg -3'
miRNA:   3'- gaGGGGCC-CGCCGGucCGGC-CG-GUCG- -5'
5386 3' -68.2 NC_001798.1 + 59929 0.67 0.340611
Target:  5'- --aCCCGGGCu-CC-GGCCGaGCCAGUu -3'
miRNA:   3'- gagGGGCCCGccGGuCCGGC-CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 88361 0.67 0.340611
Target:  5'- gUCCCuCGGGCaG--GGGUCGcGCCAGCc -3'
miRNA:   3'- gAGGG-GCCCGcCggUCCGGC-CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 43363 0.67 0.339906
Target:  5'- gUCCCCGGG-GGUUguuGGugcgaacGCgGGCCAGCc -3'
miRNA:   3'- gAGGGGCCCgCCGG---UC-------CGgCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 146560 0.67 0.333611
Target:  5'- -gCCgCGGGCcaGCagaCGGGCCgcgGGCCAGCa -3'
miRNA:   3'- gaGGgGCCCGc-CG---GUCCGG---CCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 86312 0.67 0.333611
Target:  5'- gUUgCUGGuGCgGGCCuacuGGCUGGCCAuGCg -3'
miRNA:   3'- gAGgGGCC-CG-CCGGu---CCGGCCGGU-CG- -5'
5386 3' -68.2 NC_001798.1 + 56244 0.67 0.332917
Target:  5'- ---aCC-GGCGGCCGGGCCcGGCCccggaguuaccgcAGCc -3'
miRNA:   3'- gaggGGcCCGCCGGUCCGG-CCGG-------------UCG- -5'
5386 3' -68.2 NC_001798.1 + 135180 0.67 0.326718
Target:  5'- uUCUCCGGGCu-CCAGGCCcagcuccuGGCC-GCc -3'
miRNA:   3'- gAGGGGCCCGccGGUCCGG--------CCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 97461 0.67 0.326718
Target:  5'- -gUgCUGGcGCGGCUggGGGCCGG-CGGCg -3'
miRNA:   3'- gaGgGGCC-CGCCGG--UCCGGCCgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 130245 0.67 0.326718
Target:  5'- gUCUCCGGGCGGCCc-GCCacGCCuAGa -3'
miRNA:   3'- gAGGGGCCCGCCGGucCGGc-CGG-UCg -5'
5386 3' -68.2 NC_001798.1 + 22397 0.67 0.326718
Target:  5'- -aCCCC-GGCGaGCCGGGgCGcGgCGGCg -3'
miRNA:   3'- gaGGGGcCCGC-CGGUCCgGC-CgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 150830 0.67 0.32467
Target:  5'- gCUCCgCGGGgcgccagggggcgcCGGUCGGGUcgCGGCgGGCu -3'
miRNA:   3'- -GAGGgGCCC--------------GCCGGUCCG--GCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 6373 0.67 0.31993
Target:  5'- ---gCCGGGgGGCCgggGGGCCggggGGCCGGg -3'
miRNA:   3'- gaggGGCCCgCCGG---UCCGG----CCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 1355 0.67 0.31993
Target:  5'- gCUCCgCCGGGCcGCCGcGCaCGGCgucgcgcccCAGCg -3'
miRNA:   3'- -GAGG-GGCCCGcCGGUcCG-GCCG---------GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.