miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 70 0.66 0.362241
Target:  5'- ----gCGGGCGGCgGcGGCgGGCgGGCg -3'
miRNA:   3'- gagggGCCCGCCGgU-CCGgCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 1142 0.67 0.354926
Target:  5'- -gCCUC-GGCGGCguGGCCaGCCccgcGGCg -3'
miRNA:   3'- gaGGGGcCCGCCGguCCGGcCGG----UCG- -5'
5386 3' -68.2 NC_001798.1 + 1213 0.74 0.10375
Target:  5'- gUCCCCGcGCGGCCcgcGGCCGacgcCCAGCg -3'
miRNA:   3'- gAGGGGCcCGCCGGu--CCGGCc---GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 1355 0.67 0.31993
Target:  5'- gCUCCgCCGGGCcGCCGcGCaCGGCgucgcgcccCAGCg -3'
miRNA:   3'- -GAGG-GGCCCGcCGGUcCG-GCCG---------GUCG- -5'
5386 3' -68.2 NC_001798.1 + 1497 0.73 0.13204
Target:  5'- gUCgCCCGcgcccgaggcGGCGGCCcGGCCGuCCAGCg -3'
miRNA:   3'- gAG-GGGC----------CCGCCGGuCCGGCcGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 1697 0.72 0.148719
Target:  5'- -cCCCCGGcccgaacacGCGGCCGGa--GGCCAGCa -3'
miRNA:   3'- gaGGGGCC---------CGCCGGUCcggCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 1729 0.68 0.287586
Target:  5'- ----aCGGuGCGGCgCAGgucccgcgccGCCGGCCAGCg -3'
miRNA:   3'- gagggGCC-CGCCG-GUC----------CGGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 2010 0.73 0.125864
Target:  5'- --gCCCaGGCGGCCGuGGCgGGCCcGCa -3'
miRNA:   3'- gagGGGcCCGCCGGU-CCGgCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 2109 0.72 0.163038
Target:  5'- -cCCCCGGcGCGGCCcgcGGCCaGGuccucgcCCGGCa -3'
miRNA:   3'- gaGGGGCC-CGCCGGu--CCGG-CC-------GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 2174 0.69 0.257303
Target:  5'- gUCCuCCGGGuCGGgcaccuggcgcauCCAGGCCGccGCgCGGCg -3'
miRNA:   3'- gAGG-GGCCC-GCC-------------GGUCCGGC--CG-GUCG- -5'
5386 3' -68.2 NC_001798.1 + 2261 0.75 0.08962
Target:  5'- -gCCgCCGGGgGGCgGGGCggcgcagcgcgCGGCCAGCg -3'
miRNA:   3'- gaGG-GGCCCgCCGgUCCG-----------GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 2398 0.69 0.230713
Target:  5'- cCUCCa-GGGCGGC--GGCCGagggcGCCGGCg -3'
miRNA:   3'- -GAGGggCCCGCCGguCCGGC-----CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 2437 0.7 0.201351
Target:  5'- -gCCCC-GGCGGCU-GGCgGcGCCAGCc -3'
miRNA:   3'- gaGGGGcCCGCCGGuCCGgC-CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 2462 0.7 0.21076
Target:  5'- -gCCCugCGGGUcggGGCCcucGGCgGGCCGGCg -3'
miRNA:   3'- gaGGG--GCCCG---CCGGu--CCGgCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 2554 0.66 0.391757
Target:  5'- -cCCCCgcgggagGGGCGGCCgcGGGgCGGggGGCg -3'
miRNA:   3'- gaGGGG-------CCCGCCGG--UCCgGCCggUCG- -5'
5386 3' -68.2 NC_001798.1 + 2601 0.66 0.362241
Target:  5'- uUCUUCGGGgGGCgCGGggcGCCGcCCGGCg -3'
miRNA:   3'- gAGGGGCCCgCCG-GUC---CGGCcGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 2668 0.74 0.1063
Target:  5'- cCUCCCgCGGcGCGGaggCGGGCgCGGCgAGCg -3'
miRNA:   3'- -GAGGG-GCC-CGCCg--GUCCG-GCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 2801 0.67 0.313249
Target:  5'- -gCUCCGcGGCaGcGCCGGGCCcagGGCCccGGCg -3'
miRNA:   3'- gaGGGGC-CCG-C-CGGUCCGG---CCGG--UCG- -5'
5386 3' -68.2 NC_001798.1 + 3003 0.82 0.026793
Target:  5'- -gCCCCGGGCgcgggggcgcggcgGGCCGGGCucCGGCCAGCc -3'
miRNA:   3'- gaGGGGCCCG--------------CCGGUCCG--GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 3042 0.69 0.254478
Target:  5'- -nCCCCGgcacGGCcGCCAGGUCGccgucgaagcccuccGCCAGCg -3'
miRNA:   3'- gaGGGGC----CCGcCGGUCCGGC---------------CGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.