miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 19853 0.67 0.313249
Target:  5'- -gCCCgGGGCGGgUAGGCCaGaGCguuCGGCg -3'
miRNA:   3'- gaGGGgCCCGCCgGUCCGG-C-CG---GUCG- -5'
5386 3' -68.2 NC_001798.1 + 19984 0.67 0.347716
Target:  5'- -cCCgCCGGacGCGGauuCCGGGuucucCCGGCCGGCc -3'
miRNA:   3'- gaGG-GGCC--CGCC---GGUCC-----GGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 20279 0.69 0.257871
Target:  5'- -cCCCaCGuGcGCGGCCccAGGCgGGuCCGGCa -3'
miRNA:   3'- gaGGG-GC-C-CGCCGG--UCCGgCC-GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 22133 0.66 0.361505
Target:  5'- -gCCCCuuugGGGcCGGCgGgGGCCaacgggagcgcggGGCCGGCa -3'
miRNA:   3'- gaGGGG----CCC-GCCGgU-CCGG-------------CCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 22397 0.67 0.326718
Target:  5'- -aCCCC-GGCGaGCCGGGgCGcGgCGGCg -3'
miRNA:   3'- gaGGGGcCCGC-CGGUCCgGC-CgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 23574 0.69 0.263606
Target:  5'- -gCCCCGGGggcggcgcccCGGCCgagcccgcccaGGGCCGaGCCcGCc -3'
miRNA:   3'- gaGGGGCCC----------GCCGG-----------UCCGGC-CGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 23670 0.7 0.215604
Target:  5'- --gCCCGcGCGGCgGuGGCCGGCC-GCg -3'
miRNA:   3'- gagGGGCcCGCCGgU-CCGGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 23709 0.7 0.196785
Target:  5'- uUCacggCCGGGCGGCCccGGCgGGUCgAGCu -3'
miRNA:   3'- gAGg---GGCCCGCCGGu-CCGgCCGG-UCG- -5'
5386 3' -68.2 NC_001798.1 + 24122 0.66 0.36966
Target:  5'- aUCUCCGGcagcGUGGCgCGGGCCGuGCCc-- -3'
miRNA:   3'- gAGGGGCC----CGCCG-GUCCGGC-CGGucg -5'
5386 3' -68.2 NC_001798.1 + 24401 0.66 0.400361
Target:  5'- -gCCCCGuugccgucggcGGCGGCgucGCCGGCCgacgAGCg -3'
miRNA:   3'- gaGGGGC-----------CCGCCGgucCGGCCGG----UCG- -5'
5386 3' -68.2 NC_001798.1 + 24674 0.69 0.235945
Target:  5'- gUgCCgGGGCuGGCCGGaGcCCGGCCcGCc -3'
miRNA:   3'- gAgGGgCCCG-CCGGUC-C-GGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 25073 0.68 0.306674
Target:  5'- -gCCCCGcccCGGCCAGggcgccGCCGGgCGGCg -3'
miRNA:   3'- gaGGGGCcc-GCCGGUC------CGGCCgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 25253 0.73 0.138494
Target:  5'- -aCCCgcaGGGCGGCUGGcGCCG-CCAGCc -3'
miRNA:   3'- gaGGGg--CCCGCCGGUC-CGGCcGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 25566 0.67 0.347716
Target:  5'- cCUCUacucgccgcugCCGGGCgaggaccuGGCCgcGGGCCGcGCCGGg -3'
miRNA:   3'- -GAGG-----------GGCCCG--------CCGG--UCCGGC-CGGUCg -5'
5386 3' -68.2 NC_001798.1 + 25624 0.67 0.340611
Target:  5'- -cCCCCGGaGUGGUCc-GCCGaGCgCGGCg -3'
miRNA:   3'- gaGGGGCC-CGCCGGucCGGC-CG-GUCG- -5'
5386 3' -68.2 NC_001798.1 + 25686 0.67 0.354926
Target:  5'- gCUCUgCGGGCccGCCAcGGCCgccugGGCgGGCa -3'
miRNA:   3'- -GAGGgGCCCGc-CGGU-CCGG-----CCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 25813 0.66 0.392535
Target:  5'- uUCCUgGGGCuGCU-GGCCGGCgccuGCg -3'
miRNA:   3'- gAGGGgCCCGcCGGuCCGGCCGgu--CG- -5'
5386 3' -68.2 NC_001798.1 + 25942 0.66 0.392535
Target:  5'- -cCCgCCGGcaGUGcGCCGuGcGCUGGCCGGCg -3'
miRNA:   3'- gaGG-GGCC--CGC-CGGU-C-CGGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 26183 0.71 0.19231
Target:  5'- gCUCCCgGcgcuGGaCGGCCGGGCCGccGCCucgGGCg -3'
miRNA:   3'- -GAGGGgC----CC-GCCGGUCCGGC--CGG---UCG- -5'
5386 3' -68.2 NC_001798.1 + 28855 0.68 0.300206
Target:  5'- --aCCggcgaGGGCGGCCucGGCCGGCgGaGCc -3'
miRNA:   3'- gagGGg----CCCGCCGGu-CCGGCCGgU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.