miRNA display CGI


Results 61 - 80 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 28985 0.68 0.269445
Target:  5'- -gCCCCaggGGGCGGC---GCCGGCCAaccGCg -3'
miRNA:   3'- gaGGGG---CCCGCCGgucCGGCCGGU---CG- -5'
5386 3' -68.2 NC_001798.1 + 29375 0.77 0.071807
Target:  5'- uUCCCCGGGggcgGGCaccacucaGGGCCGcGCCGGCg -3'
miRNA:   3'- gAGGGGCCCg---CCGg-------UCCGGC-CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 29794 0.69 0.263606
Target:  5'- -cUCCCGGGCGGaCCccGGCCccgagcGGCCGccGCg -3'
miRNA:   3'- gaGGGGCCCGCC-GGu-CCGG------CCGGU--CG- -5'
5386 3' -68.2 NC_001798.1 + 30432 0.67 0.31993
Target:  5'- -cCCCCGGccCGGCCcccGGCCGagcGCCAGg -3'
miRNA:   3'- gaGGGGCCc-GCCGGu--CCGGC---CGGUCg -5'
5386 3' -68.2 NC_001798.1 + 30768 0.74 0.117101
Target:  5'- ---gCCGaGGCGGCCgugcGGGCCGGCaCGGCc -3'
miRNA:   3'- gaggGGC-CCGCCGG----UCCGGCCG-GUCG- -5'
5386 3' -68.2 NC_001798.1 + 31327 0.71 0.186626
Target:  5'- uUCCCCcugcggccggcgggGGGCGcGCgCAGGCgCGGCgGGUg -3'
miRNA:   3'- gAGGGG--------------CCCGC-CG-GUCCG-GCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 32773 0.72 0.159627
Target:  5'- gUCUCgggagcaGGGCGcGCCcGcGCCGGCCGGCg -3'
miRNA:   3'- gAGGGg------CCCGC-CGGuC-CGGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 33268 0.78 0.056008
Target:  5'- gCUCCCUgucuugguGGGUGGgCGGGCUGGCUGGCg -3'
miRNA:   3'- -GAGGGG--------CCCGCCgGUCCGGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 34793 0.66 0.392535
Target:  5'- -gCCgCCGGcGCGGCCcgGGGCCccggGGCCcccGCn -3'
miRNA:   3'- gaGG-GGCC-CGCCGG--UCCGG----CCGGu--CG- -5'
5386 3' -68.2 NC_001798.1 + 34828 0.75 0.101257
Target:  5'- gCUCCgCCGGG-GGcCCGGGCCGGaCCgccgGGCg -3'
miRNA:   3'- -GAGG-GGCCCgCC-GGUCCGGCC-GG----UCG- -5'
5386 3' -68.2 NC_001798.1 + 34880 0.71 0.19231
Target:  5'- -gCgCCGGGCGGCUacccGGGacccCCGGCCGGg -3'
miRNA:   3'- gaGgGGCCCGCCGG----UCC----GGCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 35527 0.71 0.183627
Target:  5'- uCUCUCCGccGCGGCCGGcgcggggcguuGCCGGcCCGGCc -3'
miRNA:   3'- -GAGGGGCc-CGCCGGUC-----------CGGCC-GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 36503 0.74 0.119957
Target:  5'- --aCgCGGGCGGCCGGGCgggggcgcgcggCGGCCGGg -3'
miRNA:   3'- gagGgGCCCGCCGGUCCG------------GCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 36544 0.68 0.306674
Target:  5'- --gCgCGcGGCGGCCGGGCgggggcgcgcggCGGCCGGg -3'
miRNA:   3'- gagGgGC-CCGCCGGUCCG------------GCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 36586 0.68 0.306674
Target:  5'- --gCgCGcGGCGGCCGGGCgggggcgcgcggCGGCCGGg -3'
miRNA:   3'- gagGgGC-CCGCCGGUCCG------------GCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 37401 0.72 0.148719
Target:  5'- -gCCaCCGGGCGGguCCgugGGGCCGGCCGa- -3'
miRNA:   3'- gaGG-GGCCCGCC--GG---UCCGGCCGGUcg -5'
5386 3' -68.2 NC_001798.1 + 41459 0.66 0.36966
Target:  5'- -gCCCCgccgggggGGGCGGUC-GGCgGGCCcagaaacaacAGCg -3'
miRNA:   3'- gaGGGG--------CCCGCCGGuCCGgCCGG----------UCG- -5'
5386 3' -68.2 NC_001798.1 + 43004 0.71 0.179416
Target:  5'- -cCCCCGa-CGGCCAGGCCGcCCGGg -3'
miRNA:   3'- gaGGGGCccGCCGGUCCGGCcGGUCg -5'
5386 3' -68.2 NC_001798.1 + 43039 0.7 0.220544
Target:  5'- -gCCCCGGGCGcaaaugcggcGCguGagccGCCGGCCgAGCg -3'
miRNA:   3'- gaGGGGCCCGC----------CGguC----CGGCCGG-UCG- -5'
5386 3' -68.2 NC_001798.1 + 43363 0.67 0.339906
Target:  5'- gUCCCCGGG-GGUUguuGGugcgaacGCgGGCCAGCc -3'
miRNA:   3'- gAGGGGCCCgCCGG---UC-------CGgCCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.