miRNA display CGI


Results 81 - 100 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 47241 0.67 0.347716
Target:  5'- gUCgUUGGGCGGCCc--CCGGCCuuuGCu -3'
miRNA:   3'- gAGgGGCCCGCCGGuccGGCCGGu--CG- -5'
5386 3' -68.2 NC_001798.1 + 47858 0.75 0.09644
Target:  5'- -cCCCCGGG-GGCCccgugGGcGCCGGCgGGCg -3'
miRNA:   3'- gaGGGGCCCgCCGG-----UC-CGGCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 48119 0.71 0.19231
Target:  5'- -cCCCCGGGUGGCCGGGUucaacaagCGcGUCuucuGCg -3'
miRNA:   3'- gaGGGGCCCGCCGGUCCG--------GC-CGGu---CG- -5'
5386 3' -68.2 NC_001798.1 + 52327 0.69 0.257871
Target:  5'- -cCCCUGGGCaGCCccgGGGUcguggCGGCCgAGCa -3'
miRNA:   3'- gaGGGGCCCGcCGG---UCCG-----GCCGG-UCG- -5'
5386 3' -68.2 NC_001798.1 + 52782 0.66 0.400361
Target:  5'- -gCCCCGGGCGcCCGuGaGCgGGaCGGCa -3'
miRNA:   3'- gaGGGGCCCGCcGGU-C-CGgCCgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 53122 0.69 0.257871
Target:  5'- gCUCCCUGcGGCuGGCgCGGuGCCugacGCCGGCc -3'
miRNA:   3'- -GAGGGGC-CCG-CCG-GUC-CGGc---CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 53448 0.68 0.287586
Target:  5'- -cUgUCGGGCGGCCAGcugaGCCGcGCCAuccuaGCg -3'
miRNA:   3'- gaGgGGCCCGCCGGUC----CGGC-CGGU-----CG- -5'
5386 3' -68.2 NC_001798.1 + 54379 0.77 0.068338
Target:  5'- -cCCaCCGGGgGGCCGcGGCgCGGUCGGCg -3'
miRNA:   3'- gaGG-GGCCCgCCGGU-CCG-GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 54571 0.69 0.235945
Target:  5'- -gCCCUGcGcCGGCC-GGCCGGCCAcGUa -3'
miRNA:   3'- gaGGGGCcC-GCCGGuCCGGCCGGU-CG- -5'
5386 3' -68.2 NC_001798.1 + 55706 0.66 0.365196
Target:  5'- uCUCUCCGccuggacgcgugucaGaGCGGCCAGGUgcuuggCGGCC-GCa -3'
miRNA:   3'- -GAGGGGC---------------C-CGCCGGUCCG------GCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 56244 0.67 0.332917
Target:  5'- ---aCC-GGCGGCCGGGCCcGGCCccggaguuaccgcAGCc -3'
miRNA:   3'- gaggGGcCCGCCGGUCCGG-CCGG-------------UCG- -5'
5386 3' -68.2 NC_001798.1 + 57461 0.68 0.275388
Target:  5'- -gUCuuGGGgGGCgGGGCCGGUuUGGCg -3'
miRNA:   3'- gaGGggCCCgCCGgUCCGGCCG-GUCG- -5'
5386 3' -68.2 NC_001798.1 + 58405 0.74 0.10375
Target:  5'- -cCCUCGcGCGGCgCAGG-CGGCCAGCg -3'
miRNA:   3'- gaGGGGCcCGCCG-GUCCgGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 58913 0.7 0.220046
Target:  5'- cCUCCCCGaGGCuccacagGGCCAcGGCCGcucccccgccGaCCAGCc -3'
miRNA:   3'- -GAGGGGC-CCG-------CCGGU-CCGGC----------C-GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 59467 0.66 0.400361
Target:  5'- -gCCCgGGcGCGGUgAGGCguuCGGCCAc- -3'
miRNA:   3'- gaGGGgCC-CGCCGgUCCG---GCCGGUcg -5'
5386 3' -68.2 NC_001798.1 + 59788 0.67 0.347716
Target:  5'- --aCgCGGGCGGuacCCGGGCCuGGCCcucgaGGCc -3'
miRNA:   3'- gagGgGCCCGCC---GGUCCGG-CCGG-----UCG- -5'
5386 3' -68.2 NC_001798.1 + 59870 0.7 0.215604
Target:  5'- -gUCCUGGcuGUGGUCGGGCCGGCCcgagAGUc -3'
miRNA:   3'- gaGGGGCC--CGCCGGUCCGGCCGG----UCG- -5'
5386 3' -68.2 NC_001798.1 + 59929 0.67 0.340611
Target:  5'- --aCCCGGGCu-CC-GGCCGaGCCAGUu -3'
miRNA:   3'- gagGGGCCCGccGGuCCGGC-CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 61840 0.7 0.215604
Target:  5'- -gCCCCGGG-GGaCCGGggaacgcgggccGCCGGcCCAGCc -3'
miRNA:   3'- gaGGGGCCCgCC-GGUC------------CGGCC-GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 61887 0.7 0.201351
Target:  5'- -cCCUCGGGCGcGCCcucgaaGCCGGCCcuGCg -3'
miRNA:   3'- gaGGGGCCCGC-CGGuc----CGGCCGGu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.