miRNA display CGI


Results 21 - 40 of 220 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 147198 0.69 0.235945
Target:  5'- -cCCCCGcccGGCGGUCcGGCCcgGGCCcccGGCg -3'
miRNA:   3'- gaGGGGC---CCGCCGGuCCGG--CCGG---UCG- -5'
5386 3' -68.2 NC_001798.1 + 147017 0.75 0.101257
Target:  5'- -cCCCCGGGCgGGCCgGGGCUuGGCC-GCc -3'
miRNA:   3'- gaGGGGCCCG-CCGG-UCCGG-CCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 146560 0.67 0.333611
Target:  5'- -gCCgCGGGCcaGCagaCGGGCCgcgGGCCAGCa -3'
miRNA:   3'- gaGGgGCCCGc-CG---GUCCGG---CCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 146477 0.8 0.038452
Target:  5'- -gCCgCGGGCuccggGGCCGGGCCGGgCCGGCa -3'
miRNA:   3'- gaGGgGCCCG-----CCGGUCCGGCC-GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 146304 0.67 0.354926
Target:  5'- ----gUGGGCGGCCGGGCgGGaggaUGGCg -3'
miRNA:   3'- gagggGCCCGCCGGUCCGgCCg---GUCG- -5'
5386 3' -68.2 NC_001798.1 + 143814 0.73 0.13204
Target:  5'- --gCCCGGGCGGC---GCgCGGCCAGCc -3'
miRNA:   3'- gagGGGCCCGCCGgucCG-GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 143309 0.66 0.36966
Target:  5'- -gCCCCcGGCGGgUc-GCCGGCCAcGCu -3'
miRNA:   3'- gaGGGGcCCGCCgGucCGGCCGGU-CG- -5'
5386 3' -68.2 NC_001798.1 + 140179 0.66 0.390206
Target:  5'- -cCCCCaGuacgcgggccgccuGCGGCCGGuGCUGGUguGCg -3'
miRNA:   3'- gaGGGGcC--------------CGCCGGUC-CGGCCGguCG- -5'
5386 3' -68.2 NC_001798.1 + 138727 0.72 0.163421
Target:  5'- -gCCCCGGGcCGGCgCGcuccgcGGCCccggcgaccguGGCCAGCu -3'
miRNA:   3'- gaGGGGCCC-GCCG-GU------CCGG-----------CCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 137915 0.75 0.100765
Target:  5'- cCUCCgCCGGGCGGCCcgcgccucccccGGCCGcCCGGUc -3'
miRNA:   3'- -GAGG-GGCCCGCCGGu-----------CCGGCcGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 137397 0.66 0.36966
Target:  5'- uUCuCCCGGGCGaCCGGGaUCGGguCCGGg -3'
miRNA:   3'- gAG-GGGCCCGCcGGUCC-GGCC--GGUCg -5'
5386 3' -68.2 NC_001798.1 + 135999 0.7 0.22558
Target:  5'- -gUCCCGGG-GGCgGGGaguCGGUCGGCg -3'
miRNA:   3'- gaGGGGCCCgCCGgUCCg--GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 135764 0.76 0.073605
Target:  5'- aUCCUCcGGCGGCCGGccGCCGGCCcGCc -3'
miRNA:   3'- gAGGGGcCCGCCGGUC--CGGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 135305 0.69 0.257871
Target:  5'- -gCCCUGGGC--CCGGGCCGuGCUggAGCg -3'
miRNA:   3'- gaGGGGCCCGccGGUCCGGC-CGG--UCG- -5'
5386 3' -68.2 NC_001798.1 + 135220 0.7 0.199972
Target:  5'- -gCCUCGGGgaGGCCGGGCUgccggaagcccgggGGCgGGCg -3'
miRNA:   3'- gaGGGGCCCg-CCGGUCCGG--------------CCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 135180 0.67 0.326718
Target:  5'- uUCUCCGGGCu-CCAGGCCcagcuccuGGCC-GCc -3'
miRNA:   3'- gAGGGGCCCGccGGUCCGG--------CCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 135137 0.75 0.08962
Target:  5'- -cCCCCcGGCGGCCgucGGGCCGGUCuggacGGCg -3'
miRNA:   3'- gaGGGGcCCGCCGG---UCCGGCCGG-----UCG- -5'
5386 3' -68.2 NC_001798.1 + 135025 0.7 0.206009
Target:  5'- -cCCCgCGGGCauggccGGCCGuGGCCucggaggcGGCCGGCc -3'
miRNA:   3'- gaGGG-GCCCG------CCGGU-CCGG--------CCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 134981 0.66 0.377183
Target:  5'- gUgCCUGGG-GGCCuGGCCcgcGGUgGGCg -3'
miRNA:   3'- gAgGGGCCCgCCGGuCCGG---CCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 134269 0.68 0.306674
Target:  5'- -gCCCUGGaGCGccagaCGGGCCGGUgGGCc -3'
miRNA:   3'- gaGGGGCC-CGCcg---GUCCGGCCGgUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.