miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 133931 0.66 0.392535
Target:  5'- -cCCCCGGGCGuCguGGCaUGGaagcccCCGGCa -3'
miRNA:   3'- gaGGGGCCCGCcGguCCG-GCC------GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 132125 0.73 0.125864
Target:  5'- gUCCUgCaGGCGGCCcugcgccgccggGGGCCGGCgGGCg -3'
miRNA:   3'- gAGGG-GcCCGCCGG------------UCCGGCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 131343 0.71 0.187924
Target:  5'- -gCCCCGGGCGcgacGUCGGcGcCCGGCgCGGCc -3'
miRNA:   3'- gaGGGGCCCGC----CGGUC-C-GGCCG-GUCG- -5'
5386 3' -68.2 NC_001798.1 + 131073 0.68 0.306674
Target:  5'- -cCCaCCGcGGCGuaCAcGGCCGccGCCAGCa -3'
miRNA:   3'- gaGG-GGC-CCGCcgGU-CCGGC--CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 130488 0.67 0.319257
Target:  5'- -aCCaCCGGuGUgguagugcucgcaGGCCAGGCCGacgauGCCGGUg -3'
miRNA:   3'- gaGG-GGCC-CG-------------CCGGUCCGGC-----CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 130245 0.67 0.326718
Target:  5'- gUCUCCGGGCGGCCc-GCCacGCCuAGa -3'
miRNA:   3'- gAGGGGCCCGCCGGucCGGc-CGG-UCg -5'
5386 3' -68.2 NC_001798.1 + 129680 0.66 0.384808
Target:  5'- gUCaCCCGGGC-GCCGGGgCCccaguaCCGGCg -3'
miRNA:   3'- gAG-GGGCCCGcCGGUCC-GGcc----GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 128231 0.74 0.104509
Target:  5'- gCUCCCuCGucgugucgcuggaGGCGGCCggcaugguggaccgcGGGCuCGGCCGGCa -3'
miRNA:   3'- -GAGGG-GC-------------CCGCCGG---------------UCCG-GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 127945 0.72 0.145237
Target:  5'- -gCCCCGGGCGaaaAGGcCCGGCCcGCg -3'
miRNA:   3'- gaGGGGCCCGCcggUCC-GGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 124428 0.68 0.275388
Target:  5'- -gCCCCGcGGUcGCgCGGGCCguGGCCAGa -3'
miRNA:   3'- gaGGGGC-CCGcCG-GUCCGG--CCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 124019 0.78 0.060356
Target:  5'- -cCCCCGGGCaGCCGGGCCcGCCAu- -3'
miRNA:   3'- gaGGGGCCCGcCGGUCCGGcCGGUcg -5'
5386 3' -68.2 NC_001798.1 + 123385 0.69 0.230196
Target:  5'- gUCCCCaGGCGacGCCAGGCCccccgggagccgcGGCCccGCc -3'
miRNA:   3'- gAGGGGcCCGC--CGGUCCGG-------------CCGGu-CG- -5'
5386 3' -68.2 NC_001798.1 + 122816 0.76 0.075445
Target:  5'- --aUCUGGGCGGCCAGGgCGGUCGGg -3'
miRNA:   3'- gagGGGCCCGCCGGUCCgGCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 122060 0.68 0.299565
Target:  5'- -gCCCUGGGCGcGUCGGacgcggaggcgguGCUGGCgGGCc -3'
miRNA:   3'- gaGGGGCCCGC-CGGUC-------------CGGCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 122017 0.67 0.340611
Target:  5'- gCUCCgCCaGGGCGcccugguccaCCAGGCCG-UCAGCg -3'
miRNA:   3'- -GAGG-GG-CCCGCc---------GGUCCGGCcGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 121839 0.66 0.392535
Target:  5'- uCUCCCCGGaGgagcagcucaCGGCCccgggAGGCgacaCGGCCAccGCg -3'
miRNA:   3'- -GAGGGGCC-C----------GCCGG-----UCCG----GCCGGU--CG- -5'
5386 3' -68.2 NC_001798.1 + 121790 0.79 0.045849
Target:  5'- -gUCUCGGGCggGGCCGGGCCGGCCguugucGGCa -3'
miRNA:   3'- gaGGGGCCCG--CCGGUCCGGCCGG------UCG- -5'
5386 3' -68.2 NC_001798.1 + 121464 0.66 0.36966
Target:  5'- gUCCCCaGcGCGGgCGGGCUGuucgucucccuGCCGGUc -3'
miRNA:   3'- gAGGGGcC-CGCCgGUCCGGC-----------CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 120220 0.69 0.241275
Target:  5'- -gCCCCGGGCcguuGGCCcccGCCgaGGCCAGg -3'
miRNA:   3'- gaGGGGCCCG----CCGGuc-CGG--CCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 116423 0.67 0.35784
Target:  5'- --gCCCGcGCGGCCGacgccgccgacgaccGGCCgcaccGGCCGGCc -3'
miRNA:   3'- gagGGGCcCGCCGGU---------------CCGG-----CCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.