miRNA display CGI


Results 61 - 80 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 116190 0.7 0.220544
Target:  5'- -gCCCggagcUGGGCGGgCAGGCUcaGGCCgAGCu -3'
miRNA:   3'- gaGGG-----GCCCGCCgGUCCGG--CCGG-UCG- -5'
5386 3' -68.2 NC_001798.1 + 115730 0.67 0.340611
Target:  5'- gCUUCCC-GGCGGCgAaguccccccGGCCGGuCCGGg -3'
miRNA:   3'- -GAGGGGcCCGCCGgU---------CCGGCC-GGUCg -5'
5386 3' -68.2 NC_001798.1 + 115513 0.68 0.281434
Target:  5'- aUCCguaCGGggcguacgucGCGGCCccGGCCGGCCccGGCg -3'
miRNA:   3'- gAGGg--GCC----------CGCCGGu-CCGGCCGG--UCG- -5'
5386 3' -68.2 NC_001798.1 + 114755 0.66 0.377183
Target:  5'- uCUUCCUGGGCaaggcGGCCaucgccgcgAGGCCaucgaGGCCuGGCu -3'
miRNA:   3'- -GAGGGGCCCG-----CCGG---------UCCGG-----CCGG-UCG- -5'
5386 3' -68.2 NC_001798.1 + 112179 0.7 0.206009
Target:  5'- cCUCCCCcacGGGCcGCacgucccgCAGGCCGcGCUGGCg -3'
miRNA:   3'- -GAGGGG---CCCGcCG--------GUCCGGC-CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 112041 0.66 0.384041
Target:  5'- -cCCCCGGGCuGGUUcgcagcgAGGUgcaguauuCGGCCAGg -3'
miRNA:   3'- gaGGGGCCCG-CCGG-------UCCG--------GCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 111583 0.72 0.155913
Target:  5'- gCUCCCugagCGGGgGGCCcGGCgGGgCGGCc -3'
miRNA:   3'- -GAGGG----GCCCgCCGGuCCGgCCgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 111011 0.69 0.230713
Target:  5'- aUgCgUGGccGCGGCCAGGCguccgUGGCCGGCg -3'
miRNA:   3'- gAgGgGCC--CGCCGGUCCG-----GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 110896 0.7 0.206009
Target:  5'- --aCCCGGcgguucgcguGCGGCCAGccgcccccGCCGGCCcGCg -3'
miRNA:   3'- gagGGGCC----------CGCCGGUC--------CGGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 109693 0.66 0.36966
Target:  5'- uUCCUggCGGGCGcGCCcucGGCCGaG-CAGCg -3'
miRNA:   3'- gAGGG--GCCCGC-CGGu--CCGGC-CgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 109032 0.76 0.08533
Target:  5'- gCUCCCCGGGCcuCC-GGCCGGCCccaGGUa -3'
miRNA:   3'- -GAGGGGCCCGccGGuCCGGCCGG---UCG- -5'
5386 3' -68.2 NC_001798.1 + 108574 0.66 0.372657
Target:  5'- -gUCCCGGGCcuggguaacauucgcGGCCGcGCCGGaCC-GCg -3'
miRNA:   3'- gaGGGGCCCG---------------CCGGUcCGGCC-GGuCG- -5'
5386 3' -68.2 NC_001798.1 + 105403 0.66 0.392535
Target:  5'- uUCUCCaGGGCcGCCGcGGCCgcggugcgcugGGCCuGCa -3'
miRNA:   3'- gAGGGG-CCCGcCGGU-CCGG-----------CCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 105184 0.75 0.09644
Target:  5'- aUCUCCGcGGCGGCgGGGCCcgcGGUgGGCg -3'
miRNA:   3'- gAGGGGC-CCGCCGgUCCGG---CCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 104165 0.74 0.111578
Target:  5'- --gCCUGGGCGuCCAGGCacagggCGGCCAGCc -3'
miRNA:   3'- gagGGGCCCGCcGGUCCG------GCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 102994 0.75 0.09644
Target:  5'- cCUCCacgCCGGG-GGcCCAGGugcgcCCGGCCAGCg -3'
miRNA:   3'- -GAGG---GGCCCgCC-GGUCC-----GGCCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 102642 0.7 0.196785
Target:  5'- gUCgCCGGGCGGCggagGGGCCGG--GGCg -3'
miRNA:   3'- gAGgGGCCCGCCGg---UCCGGCCggUCG- -5'
5386 3' -68.2 NC_001798.1 + 102535 0.73 0.141829
Target:  5'- gUCCCCGcGGcCGG-CAGGCCgcacgcGGUCAGCg -3'
miRNA:   3'- gAGGGGC-CC-GCCgGUCCGG------CCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 98625 0.74 0.117101
Target:  5'- -gCCUCGGGCGGCguGGCCGcGaCCGucGCg -3'
miRNA:   3'- gaGGGGCCCGCCGguCCGGC-C-GGU--CG- -5'
5386 3' -68.2 NC_001798.1 + 97461 0.67 0.326718
Target:  5'- -gUgCUGGcGCGGCUggGGGCCGG-CGGCg -3'
miRNA:   3'- gaGgGGCC-CGCCGG--UCCGGCCgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.