miRNA display CGI


Results 41 - 60 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 18828 0.66 0.400361
Target:  5'- -aCCCCGGuGgugguucgccCGGCgaaccuucgCAGGCUGGCCgAGCc -3'
miRNA:   3'- gaGGGGCC-C----------GCCG---------GUCCGGCCGG-UCG- -5'
5386 3' -68.2 NC_001798.1 + 52782 0.66 0.400361
Target:  5'- -gCCCCGGGCGcCCGuGaGCgGGaCGGCa -3'
miRNA:   3'- gaGGGGCCCGCcGGU-C-CGgCCgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 59467 0.66 0.400361
Target:  5'- -gCCCgGGcGCGGUgAGGCguuCGGCCAc- -3'
miRNA:   3'- gaGGGgCC-CGCCGgUCCG---GCCGGUcg -5'
5386 3' -68.2 NC_001798.1 + 24401 0.66 0.400361
Target:  5'- -gCCCCGuugccgucggcGGCGGCgucGCCGGCCgacgAGCg -3'
miRNA:   3'- gaGGGGC-----------CCGCCGgucCGGCCGG----UCG- -5'
5386 3' -68.2 NC_001798.1 + 86434 0.66 0.400361
Target:  5'- -aCCCCGaGGCGcaGCCcggggacggGGGCCGGUUcgugAGCc -3'
miRNA:   3'- gaGGGGC-CCGC--CGG---------UCCGGCCGG----UCG- -5'
5386 3' -68.2 NC_001798.1 + 25813 0.66 0.392535
Target:  5'- uUCCUgGGGCuGCU-GGCCGGCgccuGCg -3'
miRNA:   3'- gAGGGgCCCGcCGGuCCGGCCGgu--CG- -5'
5386 3' -68.2 NC_001798.1 + 148674 0.66 0.392535
Target:  5'- -aCCCCcaG-GGUCuGGCCGGCCAGa -3'
miRNA:   3'- gaGGGGccCgCCGGuCCGGCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 114755 0.66 0.377183
Target:  5'- uCUUCCUGGGCaaggcGGCCaucgccgcgAGGCCaucgaGGCCuGGCu -3'
miRNA:   3'- -GAGGGGCCCG-----CCGG---------UCCGG-----CCGG-UCG- -5'
5386 3' -68.2 NC_001798.1 + 134981 0.66 0.377183
Target:  5'- gUgCCUGGG-GGCCuGGCCcgcGGUgGGCg -3'
miRNA:   3'- gAgGGGCCCgCCGGuCCGG---CCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 150081 0.66 0.377183
Target:  5'- -cCCCUGGGgGGCgAGG--GGCgAGCg -3'
miRNA:   3'- gaGGGGCCCgCCGgUCCggCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 112041 0.66 0.384041
Target:  5'- -cCCCCGGGCuGGUUcgcagcgAGGUgcaguauuCGGCCAGg -3'
miRNA:   3'- gaGGGGCCCG-CCGG-------UCCG--------GCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 152359 0.66 0.384808
Target:  5'- uCUCUCCGGGUcuccuccucccGCCGGGCC-GCC-GCu -3'
miRNA:   3'- -GAGGGGCCCGc----------CGGUCCGGcCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 88019 0.66 0.384808
Target:  5'- uCUCCCgGGGgcgcuUGGCCGGGgaGGgCAGg -3'
miRNA:   3'- -GAGGGgCCC-----GCCGGUCCggCCgGUCg -5'
5386 3' -68.2 NC_001798.1 + 129680 0.66 0.384808
Target:  5'- gUCaCCCGGGC-GCCGGGgCCccaguaCCGGCg -3'
miRNA:   3'- gAG-GGGCCCGcCGGUCC-GGcc----GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 94401 0.66 0.387886
Target:  5'- gCUCUCggaggGGGCGGCUaucuGcgcccccagccuaacGGCCGGCCAGa -3'
miRNA:   3'- -GAGGGg----CCCGCCGG----U---------------CCGGCCGGUCg -5'
5386 3' -68.2 NC_001798.1 + 140179 0.66 0.390206
Target:  5'- -cCCCCaGuacgcgggccgccuGCGGCCGGuGCUGGUguGCg -3'
miRNA:   3'- gaGGGGcC--------------CGCCGGUC-CGGCCGguCG- -5'
5386 3' -68.2 NC_001798.1 + 2554 0.66 0.391757
Target:  5'- -cCCCCgcgggagGGGCGGCCgcGGGgCGGggGGCg -3'
miRNA:   3'- gaGGGG-------CCCGCCGG--UCCgGCCggUCG- -5'
5386 3' -68.2 NC_001798.1 + 15277 0.66 0.392535
Target:  5'- -gCCCCGGGUuccgGGCguGGCggUGGUCgcGGCg -3'
miRNA:   3'- gaGGGGCCCG----CCGguCCG--GCCGG--UCG- -5'
5386 3' -68.2 NC_001798.1 + 34793 0.66 0.392535
Target:  5'- -gCCgCCGGcGCGGCCcgGGGCCccggGGCCcccGCn -3'
miRNA:   3'- gaGG-GGCC-CGCCGG--UCCGG----CCGGu--CG- -5'
5386 3' -68.2 NC_001798.1 + 121839 0.66 0.392535
Target:  5'- uCUCCCCGGaGgagcagcucaCGGCCccgggAGGCgacaCGGCCAccGCg -3'
miRNA:   3'- -GAGGGGCC-C----------GCCGG-----UCCG----GCCGGU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.