miRNA display CGI


Results 81 - 100 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 75996 0.66 0.362241
Target:  5'- -gCCCCGGGC-GCCGgcGGCagGGCCccguGCc -3'
miRNA:   3'- gaGGGGCCCGcCGGU--CCGg-CCGGu---CG- -5'
5386 3' -68.2 NC_001798.1 + 70 0.66 0.362241
Target:  5'- ----gCGGGCGGCgGcGGCgGGCgGGCg -3'
miRNA:   3'- gagggGCCCGCCGgU-CCGgCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 77699 0.66 0.362241
Target:  5'- -gCCCgGGGCagcagcgaGcGCUGGGCCG-CCGGCg -3'
miRNA:   3'- gaGGGgCCCG--------C-CGGUCCGGCcGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 2601 0.66 0.362241
Target:  5'- uUCUUCGGGgGGCgCGGggcGCCGcCCGGCg -3'
miRNA:   3'- gAGGGGCCCgCCG-GUC---CGGCcGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 86833 0.66 0.362241
Target:  5'- -gCUCCGGcuccCGGcCCGGGcCCGGCC-GCg -3'
miRNA:   3'- gaGGGGCCc---GCC-GGUCC-GGCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 22133 0.66 0.361505
Target:  5'- -gCCCCuuugGGGcCGGCgGgGGCCaacgggagcgcggGGCCGGCa -3'
miRNA:   3'- gaGGGG----CCC-GCCGgU-CCGG-------------CCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 116423 0.67 0.35784
Target:  5'- --gCCCGcGCGGCCGacgccgccgacgaccGGCCgcaccGGCCGGCc -3'
miRNA:   3'- gagGGGCcCGCCGGU---------------CCGG-----CCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 84220 0.66 0.36966
Target:  5'- -cCCCCGGG-GcGCCgugGGGCCGGUUAa- -3'
miRNA:   3'- gaGGGGCCCgC-CGG---UCCGGCCGGUcg -5'
5386 3' -68.2 NC_001798.1 + 137397 0.66 0.36966
Target:  5'- uUCuCCCGGGCGaCCGGGaUCGGguCCGGg -3'
miRNA:   3'- gAG-GGGCCCGCcGGUCC-GGCC--GGUCg -5'
5386 3' -68.2 NC_001798.1 + 143309 0.66 0.36966
Target:  5'- -gCCCCcGGCGGgUc-GCCGGCCAcGCu -3'
miRNA:   3'- gaGGGGcCCGCCgGucCGGCCGGU-CG- -5'
5386 3' -68.2 NC_001798.1 + 150081 0.66 0.377183
Target:  5'- -cCCCUGGGgGGCgAGG--GGCgAGCg -3'
miRNA:   3'- gaGGGGCCCgCCGgUCCggCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 134981 0.66 0.377183
Target:  5'- gUgCCUGGG-GGCCuGGCCcgcGGUgGGCg -3'
miRNA:   3'- gAgGGGCCCgCCGGuCCGG---CCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 114755 0.66 0.377183
Target:  5'- uCUUCCUGGGCaaggcGGCCaucgccgcgAGGCCaucgaGGCCuGGCu -3'
miRNA:   3'- -GAGGGGCCCG-----CCGG---------UCCGG-----CCGG-UCG- -5'
5386 3' -68.2 NC_001798.1 + 108574 0.66 0.372657
Target:  5'- -gUCCCGGGCcuggguaacauucgcGGCCGcGCCGGaCC-GCg -3'
miRNA:   3'- gaGGGGCCCG---------------CCGGUcCGGCC-GGuCG- -5'
5386 3' -68.2 NC_001798.1 + 152636 0.66 0.36966
Target:  5'- gUCCCCccGGC-GCCccGCCGGCgCGGCc -3'
miRNA:   3'- gAGGGGc-CCGcCGGucCGGCCG-GUCG- -5'
5386 3' -68.2 NC_001798.1 + 41459 0.66 0.36966
Target:  5'- -gCCCCgccgggggGGGCGGUC-GGCgGGCCcagaaacaacAGCg -3'
miRNA:   3'- gaGGGG--------CCCGCCGGuCCGgCCGG----------UCG- -5'
5386 3' -68.2 NC_001798.1 + 121464 0.66 0.36966
Target:  5'- gUCCCCaGcGCGGgCGGGCUGuucgucucccuGCCGGUc -3'
miRNA:   3'- gAGGGGcC-CGCCgGUCCGGC-----------CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 109693 0.66 0.36966
Target:  5'- uUCCUggCGGGCGcGCCcucGGCCGaG-CAGCg -3'
miRNA:   3'- gAGGG--GCCCGC-CGGu--CCGGC-CgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 84733 0.66 0.36966
Target:  5'- gUCCUgcguaugugGGGCGGCgGGGCCGuCgGGCg -3'
miRNA:   3'- gAGGGg--------CCCGCCGgUCCGGCcGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 24122 0.66 0.36966
Target:  5'- aUCUCCGGcagcGUGGCgCGGGCCGuGCCc-- -3'
miRNA:   3'- gAGGGGCC----CGCCG-GUCCGGC-CGGucg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.