miRNA display CGI


Results 101 - 120 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5386 3' -68.2 NC_001798.1 + 1142 0.67 0.354926
Target:  5'- -gCCUC-GGCGGCguGGCCaGCCccgcGGCg -3'
miRNA:   3'- gaGGGGcCCGCCGguCCGGcCGG----UCG- -5'
5386 3' -68.2 NC_001798.1 + 149156 0.67 0.347716
Target:  5'- -cCCCCGaGGC-GCCucGGCCGGugguCCGGUg -3'
miRNA:   3'- gaGGGGC-CCGcCGGu-CCGGCC----GGUCG- -5'
5386 3' -68.2 NC_001798.1 + 153309 0.67 0.347716
Target:  5'- --gCCCGGGCucgGGCuCGGGCCcgagcucgGGCCucgGGCu -3'
miRNA:   3'- gagGGGCCCG---CCG-GUCCGG--------CCGG---UCG- -5'
5386 3' -68.2 NC_001798.1 + 59788 0.67 0.347716
Target:  5'- --aCgCGGGCGGuacCCGGGCCuGGCCcucgaGGCc -3'
miRNA:   3'- gagGgGCCCGCC---GGUCCGG-CCGG-----UCG- -5'
5386 3' -68.2 NC_001798.1 + 47241 0.67 0.347716
Target:  5'- gUCgUUGGGCGGCCc--CCGGCCuuuGCu -3'
miRNA:   3'- gAGgGGCCCGCCGGuccGGCCGGu--CG- -5'
5386 3' -68.2 NC_001798.1 + 2601 0.66 0.362241
Target:  5'- uUCUUCGGGgGGCgCGGggcGCCGcCCGGCg -3'
miRNA:   3'- gAGGGGCCCgCCG-GUC---CGGCcGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 77699 0.66 0.362241
Target:  5'- -gCCCgGGGCagcagcgaGcGCUGGGCCG-CCGGCg -3'
miRNA:   3'- gaGGGgCCCG--------C-CGGUCCGGCcGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 41459 0.66 0.36966
Target:  5'- -gCCCCgccgggggGGGCGGUC-GGCgGGCCcagaaacaacAGCg -3'
miRNA:   3'- gaGGGG--------CCCGCCGGuCCGgCCGG----------UCG- -5'
5386 3' -68.2 NC_001798.1 + 121464 0.66 0.36966
Target:  5'- gUCCCCaGcGCGGgCGGGCUGuucgucucccuGCCGGUc -3'
miRNA:   3'- gAGGGGcC-CGCCgGUCCGGC-----------CGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 109693 0.66 0.36966
Target:  5'- uUCCUggCGGGCGcGCCcucGGCCGaG-CAGCg -3'
miRNA:   3'- gAGGG--GCCCGC-CGGu--CCGGC-CgGUCG- -5'
5386 3' -68.2 NC_001798.1 + 84733 0.66 0.36966
Target:  5'- gUCCUgcguaugugGGGCGGCgGGGCCGuCgGGCg -3'
miRNA:   3'- gAGGGg--------CCCGCCGgUCCGGCcGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 24122 0.66 0.36966
Target:  5'- aUCUCCGGcagcGUGGCgCGGGCCGuGCCc-- -3'
miRNA:   3'- gAGGGGCC----CGCCG-GUCCGGC-CGGucg -5'
5386 3' -68.2 NC_001798.1 + 143309 0.66 0.36966
Target:  5'- -gCCCCcGGCGGgUc-GCCGGCCAcGCu -3'
miRNA:   3'- gaGGGGcCCGCCgGucCGGCCGGU-CG- -5'
5386 3' -68.2 NC_001798.1 + 137397 0.66 0.36966
Target:  5'- uUCuCCCGGGCGaCCGGGaUCGGguCCGGg -3'
miRNA:   3'- gAG-GGGCCCGCcGGUCC-GGCC--GGUCg -5'
5386 3' -68.2 NC_001798.1 + 84220 0.66 0.36966
Target:  5'- -cCCCCGGG-GcGCCgugGGGCCGGUUAa- -3'
miRNA:   3'- gaGGGGCCCgC-CGG---UCCGGCCGGUcg -5'
5386 3' -68.2 NC_001798.1 + 55706 0.66 0.365196
Target:  5'- uCUCUCCGccuggacgcgugucaGaGCGGCCAGGUgcuuggCGGCC-GCa -3'
miRNA:   3'- -GAGGGGC---------------C-CGCCGGUCCG------GCCGGuCG- -5'
5386 3' -68.2 NC_001798.1 + 74388 0.66 0.362241
Target:  5'- cCUCcggCCCGGG-GGCCGuGGC--GCCGGCg -3'
miRNA:   3'- -GAG---GGGCCCgCCGGU-CCGgcCGGUCG- -5'
5386 3' -68.2 NC_001798.1 + 154408 0.66 0.362241
Target:  5'- ----gCGGGCGGCgGcGGCgGGCgGGCg -3'
miRNA:   3'- gagggGCCCGCCGgU-CCGgCCGgUCG- -5'
5386 3' -68.2 NC_001798.1 + 75996 0.66 0.362241
Target:  5'- -gCCCCGGGC-GCCGgcGGCagGGCCccguGCc -3'
miRNA:   3'- gaGGGGCCCGcCGGU--CCGg-CCGGu---CG- -5'
5386 3' -68.2 NC_001798.1 + 70 0.66 0.362241
Target:  5'- ----gCGGGCGGCgGcGGCgGGCgGGCg -3'
miRNA:   3'- gagggGCCCGCCGgU-CCGgCCGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.