miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5391 3' -56 NC_001798.1 + 109379 0.66 0.898227
Target:  5'- gAGCAGCGGGcUGCG-CG----GCCGACu -3'
miRNA:   3'- -UCGUCGUCC-ACGUaGUguagCGGCUG- -5'
5391 3' -56 NC_001798.1 + 111629 0.66 0.898227
Target:  5'- gGGCGGCAGacucGCGUCGgGggCGCuCGGCg -3'
miRNA:   3'- -UCGUCGUCca--CGUAGUgUa-GCG-GCUG- -5'
5391 3' -56 NC_001798.1 + 31360 0.66 0.891551
Target:  5'- cGCGGCGGGUGgGcgaagaCGCcgCGgCGGCg -3'
miRNA:   3'- uCGUCGUCCACgUa-----GUGuaGCgGCUG- -5'
5391 3' -56 NC_001798.1 + 154427 0.66 0.884642
Target:  5'- gGGCGGCAGG-GCAgcccCGCG-CGCCc-- -3'
miRNA:   3'- -UCGUCGUCCaCGUa---GUGUaGCGGcug -5'
5391 3' -56 NC_001798.1 + 89 0.66 0.884642
Target:  5'- gGGCGGCAGG-GCAgcccCGCG-CGCCc-- -3'
miRNA:   3'- -UCGUCGUCCaCGUa---GUGUaGCGGcug -5'
5391 3' -56 NC_001798.1 + 25752 0.66 0.883939
Target:  5'- gGGCGcGCAGG-GCGUgcugcugcugucCACGcgggaccuggccuUCGCCGGCg -3'
miRNA:   3'- -UCGU-CGUCCaCGUA------------GUGU-------------AGCGGCUG- -5'
5391 3' -56 NC_001798.1 + 121120 0.66 0.877504
Target:  5'- cGGCAcCGGGaaggGC-UCGCAcCGCCGGCc -3'
miRNA:   3'- -UCGUcGUCCa---CGuAGUGUaGCGGCUG- -5'
5391 3' -56 NC_001798.1 + 111016 0.66 0.877504
Target:  5'- uGGCcGCGGccagGCGUC-CGUgGCCGGCg -3'
miRNA:   3'- -UCGuCGUCca--CGUAGuGUAgCGGCUG- -5'
5391 3' -56 NC_001798.1 + 35195 0.66 0.877504
Target:  5'- cGGCGGCGGGccccUGCGUU-CGUUGCUGcCg -3'
miRNA:   3'- -UCGUCGUCC----ACGUAGuGUAGCGGCuG- -5'
5391 3' -56 NC_001798.1 + 6937 0.66 0.877504
Target:  5'- gAGCGGCAGG---AUCGCGU-GCUGGCc -3'
miRNA:   3'- -UCGUCGUCCacgUAGUGUAgCGGCUG- -5'
5391 3' -56 NC_001798.1 + 56759 0.66 0.876049
Target:  5'- cAGCuGGCAGGUGaaggugCGCGgggggcccuggcCGCCGACg -3'
miRNA:   3'- -UCG-UCGUCCACgua---GUGUa-----------GCGGCUG- -5'
5391 3' -56 NC_001798.1 + 138185 0.66 0.87014
Target:  5'- cGCGGCcGGUGCcgC-CcUUGCCGAa -3'
miRNA:   3'- uCGUCGuCCACGuaGuGuAGCGGCUg -5'
5391 3' -56 NC_001798.1 + 30453 0.66 0.87014
Target:  5'- gAGCGcCAGG-GCAgcccCACGccCGCCGACg -3'
miRNA:   3'- -UCGUcGUCCaCGUa---GUGUa-GCGGCUG- -5'
5391 3' -56 NC_001798.1 + 89639 0.66 0.87014
Target:  5'- cAGCAGCgAGuccUGCA-CACAauacUCGCCGAUc -3'
miRNA:   3'- -UCGUCG-UCc--ACGUaGUGU----AGCGGCUG- -5'
5391 3' -56 NC_001798.1 + 55729 0.66 0.87014
Target:  5'- gAGCGGcCAGGUGCuuggcggccgCACgggggauaaggGUgGCCGGCg -3'
miRNA:   3'- -UCGUC-GUCCACGua--------GUG-----------UAgCGGCUG- -5'
5391 3' -56 NC_001798.1 + 114870 0.66 0.862557
Target:  5'- gGGCGGCcggucgacgGGGUGCugGUCACcacCGCCGcCa -3'
miRNA:   3'- -UCGUCG---------UCCACG--UAGUGua-GCGGCuG- -5'
5391 3' -56 NC_001798.1 + 21635 0.66 0.862557
Target:  5'- cGGguGCGucGGUGCccCGCucgcCGCCGGCg -3'
miRNA:   3'- -UCguCGU--CCACGuaGUGua--GCGGCUG- -5'
5391 3' -56 NC_001798.1 + 96983 0.66 0.862557
Target:  5'- cGCGGCGGGcgGCGgggC-CAggGCCGGCc -3'
miRNA:   3'- uCGUCGUCCa-CGUa--GuGUagCGGCUG- -5'
5391 3' -56 NC_001798.1 + 66806 0.66 0.859464
Target:  5'- cGCGcGCGGGUcCGUCGCGgagcccggcccggUGCCGGCg -3'
miRNA:   3'- uCGU-CGUCCAcGUAGUGUa------------GCGGCUG- -5'
5391 3' -56 NC_001798.1 + 154125 0.67 0.854761
Target:  5'- cGGCGGCGGGgaccccggcgGCGggACAUgGCgGGCg -3'
miRNA:   3'- -UCGUCGUCCa---------CGUagUGUAgCGgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.