miRNA display CGI


Results 1 - 20 of 344 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5391 5' -64.9 NC_001798.1 + 121283 0.66 0.559077
Target:  5'- cGUGCgc--GGCCGCcccgacgguggGGCGGCCGCGa- -3'
miRNA:   3'- -CGCGaccuCUGGCG-----------CCGCCGGCGCcg -5'
5391 5' -64.9 NC_001798.1 + 58501 0.66 0.559077
Target:  5'- cCGC-GGAGAUCGCuGGUGGUgcguCGaCGGUa -3'
miRNA:   3'- cGCGaCCUCUGGCG-CCGCCG----GC-GCCG- -5'
5391 5' -64.9 NC_001798.1 + 24502 0.66 0.559077
Target:  5'- cGCGCccgccuCCGCGcCGGCCGgGGCc -3'
miRNA:   3'- -CGCGaccucuGGCGCcGCCGGCgCCG- -5'
5391 5' -64.9 NC_001798.1 + 39995 0.66 0.559077
Target:  5'- cGCuGCUGucGGACuCGgGGUcGUCGCGGCg -3'
miRNA:   3'- -CG-CGACc-UCUG-GCgCCGcCGGCGCCG- -5'
5391 5' -64.9 NC_001798.1 + 39099 0.66 0.559077
Target:  5'- cGCGCaUGGccuuGGCUGuCGacGCGGCcCGCGGg -3'
miRNA:   3'- -CGCG-ACCu---CUGGC-GC--CGCCG-GCGCCg -5'
5391 5' -64.9 NC_001798.1 + 23624 0.66 0.559077
Target:  5'- -gGCccGGAcccCCGCGGCGaCCGCGGg -3'
miRNA:   3'- cgCGa-CCUcu-GGCGCCGCcGGCGCCg -5'
5391 5' -64.9 NC_001798.1 + 117559 0.66 0.559077
Target:  5'- uGCGCccaGGuG-CCGCGGCGcGCC--GGCa -3'
miRNA:   3'- -CGCGa--CCuCuGGCGCCGC-CGGcgCCG- -5'
5391 5' -64.9 NC_001798.1 + 28640 0.66 0.553452
Target:  5'- cGCGCgagcGGGccGACCGCGaccgguuccggcgccGCguGGCgGCGGCc -3'
miRNA:   3'- -CGCGa---CCU--CUGGCGC---------------CG--CCGgCGCCG- -5'
5391 5' -64.9 NC_001798.1 + 97526 0.66 0.54971
Target:  5'- cGCGgaGGAGGg-GgGGCGGaggCGUGGCg -3'
miRNA:   3'- -CGCgaCCUCUggCgCCGCCg--GCGCCG- -5'
5391 5' -64.9 NC_001798.1 + 34561 0.66 0.54971
Target:  5'- aGC-CUGGGucCCcCGGCGGacggcucaCGCGGCg -3'
miRNA:   3'- -CGcGACCUcuGGcGCCGCCg-------GCGCCG- -5'
5391 5' -64.9 NC_001798.1 + 36286 0.66 0.54971
Target:  5'- gGCGggGGGGgguGCCGUGGgugUGGCgGCGGg -3'
miRNA:   3'- -CGCgaCCUC---UGGCGCC---GCCGgCGCCg -5'
5391 5' -64.9 NC_001798.1 + 60129 0.66 0.54971
Target:  5'- uGCGgUGuGuguuuuccccguAGACCGUcuuggcguuGGCGGCCGCuuGGCc -3'
miRNA:   3'- -CGCgAC-C------------UCUGGCG---------CCGCCGGCG--CCG- -5'
5391 5' -64.9 NC_001798.1 + 60223 0.66 0.54971
Target:  5'- gGUGCUGGAcGACgCGCccuccucgcgGGCGGCaaaGGUg -3'
miRNA:   3'- -CGCGACCU-CUG-GCG----------CCGCCGgcgCCG- -5'
5391 5' -64.9 NC_001798.1 + 63262 0.66 0.54971
Target:  5'- gGCGUcGGGGGCgGgGGCGGaauacaGgGGCu -3'
miRNA:   3'- -CGCGaCCUCUGgCgCCGCCgg----CgCCG- -5'
5391 5' -64.9 NC_001798.1 + 68109 0.66 0.54971
Target:  5'- aCGCacGGGGCCGCGcaCGGCCaagaCGGCg -3'
miRNA:   3'- cGCGacCUCUGGCGCc-GCCGGc---GCCG- -5'
5391 5' -64.9 NC_001798.1 + 25163 0.66 0.54971
Target:  5'- cCGC-GGGGGCCGCGccccccgccccGCcgacgccgccGCCGCGGCc -3'
miRNA:   3'- cGCGaCCUCUGGCGC-----------CGc---------CGGCGCCG- -5'
5391 5' -64.9 NC_001798.1 + 108629 0.66 0.54971
Target:  5'- cCGCggGGAGACgaCGgGGCGaCCGagaGGCa -3'
miRNA:   3'- cGCGa-CCUCUG--GCgCCGCcGGCg--CCG- -5'
5391 5' -64.9 NC_001798.1 + 144220 0.66 0.544114
Target:  5'- cGCGCgguuagGGGGuuCGCGaGCuccggcuccaacaggGGCCGCcaGGCg -3'
miRNA:   3'- -CGCGa-----CCUCugGCGC-CG---------------CCGGCG--CCG- -5'
5391 5' -64.9 NC_001798.1 + 81076 0.66 0.540392
Target:  5'- cCGUuugUGGcuACCGCGGgGGacguucUCGCGGCg -3'
miRNA:   3'- cGCG---ACCucUGGCGCCgCC------GGCGCCG- -5'
5391 5' -64.9 NC_001798.1 + 73694 0.66 0.540392
Target:  5'- aCGCccGGcccauaaacAGGCCccgcucGUGGCGGgCGCGGCa -3'
miRNA:   3'- cGCGa-CC---------UCUGG------CGCCGCCgGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.