miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5392 5' -51 NC_001798.1 + 3884 0.66 0.993026
Target:  5'- aCGCgcccCGGggGCGGgggGCCGGCCccgggccacggcUCCCCg -3'
miRNA:   3'- -GCGau--GCUa-UGCUa--UGGUUGG------------AGGGG- -5'
5392 5' -51 NC_001798.1 + 109108 0.66 0.993026
Target:  5'- gCGCUggACGcccuccgGCGGgugGCCGGCUaCCCCg -3'
miRNA:   3'- -GCGA--UGCua-----UGCUa--UGGUUGGaGGGG- -5'
5392 5' -51 NC_001798.1 + 114978 0.66 0.993026
Target:  5'- gGCgagAUGGUcuugaACGggGCCAACCUCgUCa -3'
miRNA:   3'- gCGa--UGCUA-----UGCuaUGGUUGGAGgGG- -5'
5392 5' -51 NC_001798.1 + 52987 0.67 0.991986
Target:  5'- gGCUGgGcgGCcc-GCCAcgcccauaggcGCCUCCCCa -3'
miRNA:   3'- gCGAUgCuaUGcuaUGGU-----------UGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 39871 0.67 0.991986
Target:  5'- gGCUuCGGg--GGUGCCGGCgUCCUCg -3'
miRNA:   3'- gCGAuGCUaugCUAUGGUUGgAGGGG- -5'
5392 5' -51 NC_001798.1 + 138386 0.67 0.991986
Target:  5'- gCGCcuuauugACGAcccgcGCGGcGCCAGCCaCCCCg -3'
miRNA:   3'- -GCGa------UGCUa----UGCUaUGGUUGGaGGGG- -5'
5392 5' -51 NC_001798.1 + 141205 0.67 0.991986
Target:  5'- gGCccGCGggACGGggGCCcggacGACUUCCCCg -3'
miRNA:   3'- gCGa-UGCuaUGCUa-UGG-----UUGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 82942 0.67 0.991986
Target:  5'- aCGCUACG-UACGAagcACCggUCguagcgCCCUg -3'
miRNA:   3'- -GCGAUGCuAUGCUa--UGGuuGGa-----GGGG- -5'
5392 5' -51 NC_001798.1 + 118962 0.67 0.991986
Target:  5'- aCGCUGCGGUuucCGGUcccgcucCCAACg-CCCCu -3'
miRNA:   3'- -GCGAUGCUAu--GCUAu------GGUUGgaGGGG- -5'
5392 5' -51 NC_001798.1 + 22940 0.67 0.991986
Target:  5'- cCGCcgcCGAUGCcGUGCCGACgaggcggCCCCg -3'
miRNA:   3'- -GCGau-GCUAUGcUAUGGUUGga-----GGGG- -5'
5392 5' -51 NC_001798.1 + 91264 0.67 0.991875
Target:  5'- uGCcgGCGGcaaggcgGCGGUGCCGucuggguGgCUCCCCg -3'
miRNA:   3'- gCGa-UGCUa------UGCUAUGGU-------UgGAGGGG- -5'
5392 5' -51 NC_001798.1 + 93746 0.67 0.990826
Target:  5'- aCGCUgauGCGGcUGCGG-GCCcGCCaCCCCa -3'
miRNA:   3'- -GCGA---UGCU-AUGCUaUGGuUGGaGGGG- -5'
5392 5' -51 NC_001798.1 + 70171 0.67 0.990826
Target:  5'- cCGUUGCagguccuGUugGGgagccugACCAACCUCCgCCg -3'
miRNA:   3'- -GCGAUGc------UAugCUa------UGGUUGGAGG-GG- -5'
5392 5' -51 NC_001798.1 + 96982 0.67 0.988114
Target:  5'- cCGCgGCGGgcgGCGggGCCAggGCCggCCCg -3'
miRNA:   3'- -GCGaUGCUa--UGCuaUGGU--UGGagGGG- -5'
5392 5' -51 NC_001798.1 + 114088 0.67 0.988114
Target:  5'- gGUUAcCGGUACGccgcgGCCAuCCUgCCCa -3'
miRNA:   3'- gCGAU-GCUAUGCua---UGGUuGGAgGGG- -5'
5392 5' -51 NC_001798.1 + 10840 0.67 0.987963
Target:  5'- gGC-ACGAUACGAcccaaacUccaacaaaaaacACCAACCcggCCCCg -3'
miRNA:   3'- gCGaUGCUAUGCU-------A------------UGGUUGGa--GGGG- -5'
5392 5' -51 NC_001798.1 + 98650 0.67 0.986543
Target:  5'- uCGCgGCGA-ACGGggguCCcGCCUCCCg -3'
miRNA:   3'- -GCGaUGCUaUGCUau--GGuUGGAGGGg -5'
5392 5' -51 NC_001798.1 + 28392 0.67 0.986543
Target:  5'- cCGC-GCGGgaaGGUAC--GCCUCCCCu -3'
miRNA:   3'- -GCGaUGCUaugCUAUGguUGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 35543 0.67 0.986543
Target:  5'- gGC-GCGggGCGuUGCCGGCCcggcccggCCCCg -3'
miRNA:   3'- gCGaUGCuaUGCuAUGGUUGGa-------GGGG- -5'
5392 5' -51 NC_001798.1 + 2436 0.67 0.986543
Target:  5'- gGCcccgGCGGcugGCGGcGCCAGCCgCCCUg -3'
miRNA:   3'- gCGa---UGCUa--UGCUaUGGUUGGaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.