Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5393 | 3' | -60.8 | NC_001798.1 | + | 26082 | 0.67 | 0.614631 |
Target: 5'- cUGCGCCUCugC-CGC-GGGGC-CAa -3' miRNA: 3'- cACGCGGAGugGcGCGaCCUCGaGUa -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 110520 | 0.67 | 0.604547 |
Target: 5'- cUG-GCCgCGuCCGCGCUGGGGgUCGUu -3' miRNA: 3'- cACgCGGaGU-GGCGCGACCUCgAGUA- -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 117991 | 0.67 | 0.594482 |
Target: 5'- -aGCGCC-CGCCGgGgUGccgcGAGCUCGUg -3' miRNA: 3'- caCGCGGaGUGGCgCgAC----CUCGAGUA- -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 99178 | 0.67 | 0.588456 |
Target: 5'- -cGCGUUUCACCGggacgaccacgagacCGacaUGGAGCUCAa -3' miRNA: 3'- caCGCGGAGUGGC---------------GCg--ACCUCGAGUa -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 78398 | 0.66 | 0.665097 |
Target: 5'- cGUGCGCg--GCgGCGUUGGAGCgCGUg -3' miRNA: 3'- -CACGCGgagUGgCGCGACCUCGaGUA- -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 107663 | 0.66 | 0.655024 |
Target: 5'- uUGCGCCUCACCGC-CgGGAugaucccaacccGCgUCAc -3' miRNA: 3'- cACGCGGAGUGGCGcGaCCU------------CG-AGUa -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 54359 | 0.66 | 0.653007 |
Target: 5'- cUGCGCCUCGCgGCGUccggcccaccggGGGGCcgCGg -3' miRNA: 3'- cACGCGGAGUGgCGCGa-----------CCUCGa-GUa -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 154046 | 0.66 | 0.644933 |
Target: 5'- -cGCGCCggggCGCgGCacgGCUGGAGCg--- -3' miRNA: 3'- caCGCGGa---GUGgCG---CGACCUCGagua -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 103013 | 0.66 | 0.644933 |
Target: 5'- gGUGCGCCcgGCCaGCGC--GAGCUCGg -3' miRNA: 3'- -CACGCGGagUGG-CGCGacCUCGAGUa -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 85503 | 0.66 | 0.644933 |
Target: 5'- -cGCGCCcCACUGCGCcGcGAGCaucuUCGUg -3' miRNA: 3'- caCGCGGaGUGGCGCGaC-CUCG----AGUA- -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 24767 | 0.66 | 0.624729 |
Target: 5'- -cGCGCCUgGCUGCGCgagcUGcGGUUCGUg -3' miRNA: 3'- caCGCGGAgUGGCGCG----ACcUCGAGUA- -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 24461 | 0.66 | 0.624729 |
Target: 5'- -gGCGCCgcgggggugcUCGCCGCcCUGGGGCg--- -3' miRNA: 3'- caCGCGG----------AGUGGCGcGACCUCGagua -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 41538 | 0.66 | 0.624729 |
Target: 5'- uGUGCGCCccggcggggcgCACCGCGUaaauacaucggUGGAGCg--- -3' miRNA: 3'- -CACGCGGa----------GUGGCGCG-----------ACCUCGagua -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 86919 | 0.66 | 0.674142 |
Target: 5'- -cGgGCCUCccgcaagagccuGCCGUcgcacgcgcgcagGCUGGAGCUCu- -3' miRNA: 3'- caCgCGGAG------------UGGCG-------------CGACCUCGAGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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