Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5393 | 3' | -60.8 | NC_001798.1 | + | 24461 | 0.66 | 0.624729 |
Target: 5'- -gGCGCCgcgggggugcUCGCCGCcCUGGGGCg--- -3' miRNA: 3'- caCGCGG----------AGUGGCGcGACCUCGagua -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 24767 | 0.66 | 0.624729 |
Target: 5'- -cGCGCCUgGCUGCGCgagcUGcGGUUCGUg -3' miRNA: 3'- caCGCGGAgUGGCGCG----ACcUCGAGUA- -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 25983 | 0.72 | 0.326972 |
Target: 5'- cUGCGCCgCACCGUGCUGGccuccGGCcgCGUg -3' miRNA: 3'- cACGCGGaGUGGCGCGACC-----UCGa-GUA- -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 26082 | 0.67 | 0.614631 |
Target: 5'- cUGCGCCUCugC-CGC-GGGGC-CAa -3' miRNA: 3'- cACGCGGAGugGcGCGaCCUCGaGUa -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 26280 | 0.7 | 0.414699 |
Target: 5'- -cGCGCCU-GCgCGCGCUGGGGCc--- -3' miRNA: 3'- caCGCGGAgUG-GCGCGACCUCGagua -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 36123 | 0.69 | 0.496326 |
Target: 5'- cUGCGUCUCGCCGCGaucccgccggUGGGGCgCGg -3' miRNA: 3'- cACGCGGAGUGGCGCg---------ACCUCGaGUa -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 37160 | 0.67 | 0.614631 |
Target: 5'- -cGCGCCgCGCCGC-CUGGcgggccGCUCGg -3' miRNA: 3'- caCGCGGaGUGGCGcGACCu-----CGAGUa -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 37201 | 0.67 | 0.614631 |
Target: 5'- -cGCGCCgaacgacgggCGCgGCGCcGGAGCUUu- -3' miRNA: 3'- caCGCGGa---------GUGgCGCGaCCUCGAGua -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 39539 | 0.71 | 0.388545 |
Target: 5'- -cGCGCCUCGCCgugggugGCGCcGGGGC-CGUc -3' miRNA: 3'- caCGCGGAGUGG-------CGCGaCCUCGaGUA- -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 41538 | 0.66 | 0.624729 |
Target: 5'- uGUGCGCCccggcggggcgCACCGCGUaaauacaucggUGGAGCg--- -3' miRNA: 3'- -CACGCGGa----------GUGGCGCG-----------ACCUCGagua -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 51358 | 0.7 | 0.441014 |
Target: 5'- gGUGC-CCUCGCCGCuguucCUGGAcgaGCUCAa -3' miRNA: 3'- -CACGcGGAGUGGCGc----GACCU---CGAGUa -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 51840 | 0.68 | 0.554557 |
Target: 5'- -cGCGCCUgCACacggagggGCGCggcucGGAGCUCGa -3' miRNA: 3'- caCGCGGA-GUGg-------CGCGa----CCUCGAGUa -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 52527 | 0.71 | 0.349475 |
Target: 5'- -cGCGCg-CGCCGUGCUGGcgacggGGCUCAUc -3' miRNA: 3'- caCGCGgaGUGGCGCGACC------UCGAGUA- -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 54359 | 0.66 | 0.653007 |
Target: 5'- cUGCGCCUCGCgGCGUccggcccaccggGGGGCcgCGg -3' miRNA: 3'- cACGCGGAGUGgCGCGa-----------CCUCGa-GUa -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 59985 | 0.68 | 0.544691 |
Target: 5'- --cCGCCgaCACCGCGUUGGGGC-CGg -3' miRNA: 3'- cacGCGGa-GUGGCGCGACCUCGaGUa -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 68593 | 0.68 | 0.515458 |
Target: 5'- -gGcCGCCUCcaguCCGCGCggggGGAGCUgGc -3' miRNA: 3'- caC-GCGGAGu---GGCGCGa---CCUCGAgUa -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 78398 | 0.66 | 0.665097 |
Target: 5'- cGUGCGCg--GCgGCGUUGGAGCgCGUg -3' miRNA: 3'- -CACGCGgagUGgCGCGACCUCGaGUA- -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 85503 | 0.66 | 0.644933 |
Target: 5'- -cGCGCCcCACUGCGCcGcGAGCaucuUCGUg -3' miRNA: 3'- caCGCGGaGUGGCGCGaC-CUCG----AGUA- -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 86919 | 0.66 | 0.674142 |
Target: 5'- -cGgGCCUCccgcaagagccuGCCGUcgcacgcgcgcagGCUGGAGCUCu- -3' miRNA: 3'- caCgCGGAG------------UGGCG-------------CGACCUCGAGua -5' |
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5393 | 3' | -60.8 | NC_001798.1 | + | 96670 | 0.76 | 0.171908 |
Target: 5'- -gGCGCCacgGCCGCGCUGGAGCgCGUc -3' miRNA: 3'- caCGCGGag-UGGCGCGACCUCGaGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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