miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5393 3' -60.8 NC_001798.1 + 97721 0.68 0.544691
Target:  5'- cGUGCGCgagCAgCGCGg-GGAGCUCGa -3'
miRNA:   3'- -CACGCGga-GUgGCGCgaCCUCGAGUa -5'
5393 3' -60.8 NC_001798.1 + 68593 0.68 0.515458
Target:  5'- -gGcCGCCUCcaguCCGCGCggggGGAGCUgGc -3'
miRNA:   3'- caC-GCGGAGu---GGCGCGa---CCUCGAgUa -5'
5393 3' -60.8 NC_001798.1 + 36123 0.69 0.496326
Target:  5'- cUGCGUCUCGCCGCGaucccgccggUGGGGCgCGg -3'
miRNA:   3'- cACGCGGAGUGGCGCg---------ACCUCGaGUa -5'
5393 3' -60.8 NC_001798.1 + 96725 0.69 0.48688
Target:  5'- -cGgGCCUCAUCGUGCccccGGAGCUgAg -3'
miRNA:   3'- caCgCGGAGUGGCGCGa---CCUCGAgUa -5'
5393 3' -60.8 NC_001798.1 + 108601 0.69 0.477521
Target:  5'- -cGCGCCggACCGCGa-GGGGCUUAc -3'
miRNA:   3'- caCGCGGagUGGCGCgaCCUCGAGUa -5'
5393 3' -60.8 NC_001798.1 + 141479 0.69 0.468251
Target:  5'- --cCGgCUCGCCGCGCggGGGGCUgAUg -3'
miRNA:   3'- cacGCgGAGUGGCGCGa-CCUCGAgUA- -5'
5393 3' -60.8 NC_001798.1 + 51358 0.7 0.441014
Target:  5'- gGUGC-CCUCGCCGCuguucCUGGAcgaGCUCAa -3'
miRNA:   3'- -CACGcGGAGUGGCGc----GACCU---CGAGUa -5'
5393 3' -60.8 NC_001798.1 + 26280 0.7 0.414699
Target:  5'- -cGCGCCU-GCgCGCGCUGGGGCc--- -3'
miRNA:   3'- caCGCGGAgUG-GCGCGACCUCGagua -5'
5393 3' -60.8 NC_001798.1 + 39539 0.71 0.388545
Target:  5'- -cGCGCCUCGCCgugggugGCGCcGGGGC-CGUc -3'
miRNA:   3'- caCGCGGAGUGG-------CGCGaCCUCGaGUA- -5'
5393 3' -60.8 NC_001798.1 + 130263 0.71 0.365078
Target:  5'- --aCGCCUagaACCGCGCaUGGAGCUgCGUa -3'
miRNA:   3'- cacGCGGAg--UGGCGCG-ACCUCGA-GUA- -5'
5393 3' -60.8 NC_001798.1 + 52527 0.71 0.349475
Target:  5'- -cGCGCg-CGCCGUGCUGGcgacggGGCUCAUc -3'
miRNA:   3'- caCGCGgaGUGGCGCGACC------UCGAGUA- -5'
5393 3' -60.8 NC_001798.1 + 100387 0.72 0.326972
Target:  5'- cUGCGCCUCACCcgcgacGCGCUcGAGC-CGUg -3'
miRNA:   3'- cACGCGGAGUGG------CGCGAcCUCGaGUA- -5'
5393 3' -60.8 NC_001798.1 + 25983 0.72 0.326972
Target:  5'- cUGCGCCgCACCGUGCUGGccuccGGCcgCGUg -3'
miRNA:   3'- cACGCGGaGUGGCGCGACC-----UCGa-GUA- -5'
5393 3' -60.8 NC_001798.1 + 96670 0.76 0.171908
Target:  5'- -gGCGCCacgGCCGCGCUGGAGCgCGUc -3'
miRNA:   3'- caCGCGGag-UGGCGCGACCUCGaGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.