miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5393 5' -56.6 NC_001798.1 + 68585 0.67 0.849715
Target:  5'- cGCuCGAGgGCCGCCuCCaGUccgcgcgGGGGGAGc -3'
miRNA:   3'- -CGuGUUUgUGGUGG-GGaCA-------CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 69174 0.67 0.850502
Target:  5'- aGCcCGAugGCgGgCCagGUGGGGGAGg -3'
miRNA:   3'- -CGuGUUugUGgUgGGgaCACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 124126 0.67 0.858267
Target:  5'- cGCGCuGugGCgCGCCCCcgccGUGGcGGAGg -3'
miRNA:   3'- -CGUGuUugUG-GUGGGGa---CACCcCCUC- -5'
5393 5' -56.6 NC_001798.1 + 30475 0.67 0.858267
Target:  5'- cCGCcGACGCgCAgggaUCCUGUGGGGGuGg -3'
miRNA:   3'- cGUGuUUGUG-GUg---GGGACACCCCCuC- -5'
5393 5' -56.6 NC_001798.1 + 27260 0.67 0.858267
Target:  5'- cGCGgGAcCGCaGCCCCgUGgcgcgcggGGGGGAGg -3'
miRNA:   3'- -CGUgUUuGUGgUGGGG-ACa-------CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 98501 0.67 0.853632
Target:  5'- gGCGgGAGCgACgCGCCCCcGUaggcccgccaugcgcGGGGGGGg -3'
miRNA:   3'- -CGUgUUUG-UG-GUGGGGaCA---------------CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 6675 0.67 0.850502
Target:  5'- gGC-CGGGCGCCGCCUUcGUGGacGGGAc -3'
miRNA:   3'- -CGuGUUUGUGGUGGGGaCACC--CCCUc -5'
5393 5' -56.6 NC_001798.1 + 116245 0.68 0.781943
Target:  5'- gGCGCu-GCuGCCGCCCCUcGUGuGGGAc -3'
miRNA:   3'- -CGUGuuUG-UGGUGGGGA-CACcCCCUc -5'
5393 5' -56.6 NC_001798.1 + 137130 0.68 0.791067
Target:  5'- -aACGAACcgcaACCGCCCCc-UGGGGGuGa -3'
miRNA:   3'- cgUGUUUG----UGGUGGGGacACCCCCuC- -5'
5393 5' -56.6 NC_001798.1 + 54240 0.68 0.791067
Target:  5'- cCACGAugACCGCCCCgagcUGGGcccGGAu -3'
miRNA:   3'- cGUGUUugUGGUGGGGac--ACCC---CCUc -5'
5393 5' -56.6 NC_001798.1 + 107734 0.68 0.791067
Target:  5'- gGCGCGcACGUUugCCCgcgagGUGGGGGGa -3'
miRNA:   3'- -CGUGUuUGUGGugGGGa----CACCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 107041 0.68 0.800049
Target:  5'- gGCgACGGACGCCguuuugGCUCCUcauaucggGGGGGAGg -3'
miRNA:   3'- -CG-UGUUUGUGG------UGGGGAca------CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 114467 0.68 0.800049
Target:  5'- cCACcGAgGCCAUugCCCUGcucacGGGGGAGg -3'
miRNA:   3'- cGUGuUUgUGGUG--GGGACa----CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 126705 0.68 0.800049
Target:  5'- aGCuCGu-CGCgACCCUgcucGUGGGGGAGu -3'
miRNA:   3'- -CGuGUuuGUGgUGGGGa---CACCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 5023 0.68 0.800049
Target:  5'- cCGCcGACAUCGCCUCcgaccggggUGUGcGGGGGGg -3'
miRNA:   3'- cGUGuUUGUGGUGGGG---------ACAC-CCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 2611 0.68 0.808881
Target:  5'- gGCGCgGGGCGCCGCccggcggcgCCCUGgccGGGGcGGGg -3'
miRNA:   3'- -CGUG-UUUGUGGUG---------GGGACa--CCCC-CUC- -5'
5393 5' -56.6 NC_001798.1 + 43379 0.68 0.800049
Target:  5'- gGUGCGAACGCgGgCCagccGUGGGGGAc -3'
miRNA:   3'- -CGUGUUUGUGgUgGGga--CACCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 105655 0.68 0.817554
Target:  5'- gGCGCccAACACCACguuCUUUGaGGGGGGGa -3'
miRNA:   3'- -CGUGu-UUGUGGUG---GGGACaCCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 30250 0.69 0.763305
Target:  5'- -aGCAGccCGCCGCCCCgcacgccUGGGGGAu -3'
miRNA:   3'- cgUGUUu-GUGGUGGGGac-----ACCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 23854 0.69 0.763305
Target:  5'- gGCugGgcGACAgCCGCCCCggccucUGGGGGGc -3'
miRNA:   3'- -CGugU--UUGU-GGUGGGGac----ACCCCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.