Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5393 | 5' | -56.6 | NC_001798.1 | + | 74490 | 0.69 | 0.72472 |
Target: 5'- gGCGCGuggccauCACCcacCCCCUGcGGGGcGAGa -3' miRNA: 3'- -CGUGUuu-----GUGGu--GGGGACaCCCC-CUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 3876 | 0.69 | 0.72472 |
Target: 5'- cGUAC-AGCACgCGCCCCgggGGcGGGGGg -3' miRNA: 3'- -CGUGuUUGUG-GUGGGGacaCC-CCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 29493 | 0.69 | 0.734507 |
Target: 5'- cCGgGGACgggGCCGCCCCgagaGGGGGGGa -3' miRNA: 3'- cGUgUUUG---UGGUGGGGaca-CCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 150053 | 0.69 | 0.744207 |
Target: 5'- gGCGC-GGCGCCGCCCUcuUGgcccccacccccUGGGGGGc -3' miRNA: 3'- -CGUGuUUGUGGUGGGG--AC------------ACCCCCUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 85953 | 0.69 | 0.753809 |
Target: 5'- uGCACGcGCGCCGCCgCCcGcaacGGGGAGu -3' miRNA: 3'- -CGUGUuUGUGGUGG-GGaCac--CCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 23854 | 0.69 | 0.763305 |
Target: 5'- gGCugGgcGACAgCCGCCCCggccucUGGGGGGc -3' miRNA: 3'- -CGugU--UUGU-GGUGGGGac----ACCCCCUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 30250 | 0.69 | 0.763305 |
Target: 5'- -aGCAGccCGCCGCCCCgcacgccUGGGGGAu -3' miRNA: 3'- cgUGUUu-GUGGUGGGGac-----ACCCCCUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 126101 | 0.69 | 0.763305 |
Target: 5'- cGCgGCGAACGCgu-CUCUGUGGGGGGa -3' miRNA: 3'- -CG-UGUUUGUGgugGGGACACCCCCUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 27513 | 0.7 | 0.672756 |
Target: 5'- cGCGCGggGGCGCCcgcgggaaggcaGCCCCgcggcgcgcgGGGGGAGg -3' miRNA: 3'- -CGUGU--UUGUGG------------UGGGGaca-------CCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 9153 | 0.7 | 0.674778 |
Target: 5'- gGCGC-GGCGCCGCCCgCgccgGGGGGcAGg -3' miRNA: 3'- -CGUGuUUGUGGUGGG-Gaca-CCCCC-UC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 29995 | 0.7 | 0.674778 |
Target: 5'- gGC-CGuGCGCCGCCCCccgacccucUGGGGGGGc -3' miRNA: 3'- -CGuGUuUGUGGUGGGGac-------ACCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 93780 | 0.7 | 0.674778 |
Target: 5'- uCGCGAGCGCCGCCCg---GGGGGc- -3' miRNA: 3'- cGUGUUUGUGGUGGGgacaCCCCCuc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 34062 | 0.7 | 0.70392 |
Target: 5'- gGC-CGGGCACgCGCCUUUGggguuguUGGGGGGGg -3' miRNA: 3'- -CGuGUUUGUG-GUGGGGAC-------ACCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 150173 | 0.71 | 0.634149 |
Target: 5'- -gGCGGGcCGCCGCCCCcuccgcggcGUGGGGGGc -3' miRNA: 3'- cgUGUUU-GUGGUGGGGa--------CACCCCCUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 121285 | 0.71 | 0.634149 |
Target: 5'- uGCGCG---GCCGCCCCgacgGUGGGGcGGc -3' miRNA: 3'- -CGUGUuugUGGUGGGGa---CACCCC-CUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 7779 | 0.71 | 0.613792 |
Target: 5'- cCACGAccCACCGCCCCcGcUGGcGGGAGc -3' miRNA: 3'- cGUGUUu-GUGGUGGGGaC-ACC-CCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 31523 | 0.72 | 0.543338 |
Target: 5'- cGCACAggUGuCCucggGCCCCgggGGGGGAGg -3' miRNA: 3'- -CGUGUuuGU-GG----UGGGGacaCCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 22581 | 0.72 | 0.59349 |
Target: 5'- gGCACAcGCACgCACCgCacggGGGGGAGa -3' miRNA: 3'- -CGUGUuUGUG-GUGGgGaca-CCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 153047 | 0.73 | 0.522673 |
Target: 5'- cGCGCGguuggccGGCGCCGcCCCCUGgggcGGGcGGAGc -3' miRNA: 3'- -CGUGU-------UUGUGGU-GGGGACa---CCC-CCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 12566 | 0.74 | 0.48515 |
Target: 5'- gGCGCGu-CGUCAUCCCggaUGUGGGGGAGa -3' miRNA: 3'- -CGUGUuuGUGGUGGGG---ACACCCCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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