Results 61 - 66 of 66 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5393 | 5' | -56.6 | NC_001798.1 | + | 16159 | 0.66 | 0.887246 |
Target: 5'- gGCAcCGAGCGCCACgggcggCCCgcggGgaccgGGGGGAn -3' miRNA: 3'- -CGU-GUUUGUGGUG------GGGa---Ca----CCCCCUc -5' |
|||||||
5393 | 5' | -56.6 | NC_001798.1 | + | 18201 | 0.66 | 0.887246 |
Target: 5'- aCACAGGCGCgcaGCCUCgccGGGGGAc -3' miRNA: 3'- cGUGUUUGUGg--UGGGGacaCCCCCUc -5' |
|||||||
5393 | 5' | -56.6 | NC_001798.1 | + | 568 | 0.66 | 0.887246 |
Target: 5'- cGCGCcccguGCcuucccucCCGCUCCUGcGGGGGGGc -3' miRNA: 3'- -CGUGuu---UGu-------GGUGGGGACaCCCCCUC- -5' |
|||||||
5393 | 5' | -56.6 | NC_001798.1 | + | 47841 | 0.66 | 0.887246 |
Target: 5'- cGCGCGcGCuccuCCACCCCcc-GGGGGc- -3' miRNA: 3'- -CGUGUuUGu---GGUGGGGacaCCCCCuc -5' |
|||||||
5393 | 5' | -56.6 | NC_001798.1 | + | 30822 | 0.66 | 0.900418 |
Target: 5'- cCGCGGACGgccCCGCgcuCCCUGUcgcugGGGGGAc -3' miRNA: 3'- cGUGUUUGU---GGUG---GGGACA-----CCCCCUc -5' |
|||||||
5393 | 5' | -56.6 | NC_001798.1 | + | 74697 | 0.66 | 0.900418 |
Target: 5'- gGCACccaaACCGCCCCcccgaugaugUGUGGGcagcagcccuGGAGg -3' miRNA: 3'- -CGUGuuugUGGUGGGG----------ACACCC----------CCUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home