Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5393 | 5' | -56.6 | NC_001798.1 | + | 16159 | 0.66 | 0.887246 |
Target: 5'- gGCAcCGAGCGCCACgggcggCCCgcggGgaccgGGGGGAn -3' miRNA: 3'- -CGU-GUUUGUGGUG------GGGa---Ca----CCCCCUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 18201 | 0.66 | 0.887246 |
Target: 5'- aCACAGGCGCgcaGCCUCgccGGGGGAc -3' miRNA: 3'- cGUGUUUGUGg--UGGGGacaCCCCCUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 568 | 0.66 | 0.887246 |
Target: 5'- cGCGCcccguGCcuucccucCCGCUCCUGcGGGGGGGc -3' miRNA: 3'- -CGUGuu---UGu-------GGUGGGGACaCCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 47841 | 0.66 | 0.887246 |
Target: 5'- cGCGCGcGCuccuCCACCCCcc-GGGGGc- -3' miRNA: 3'- -CGUGUuUGu---GGUGGGGacaCCCCCuc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 30822 | 0.66 | 0.900418 |
Target: 5'- cCGCGGACGgccCCGCgcuCCCUGUcgcugGGGGGAc -3' miRNA: 3'- cGUGUUUGU---GGUG---GGGACA-----CCCCCUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 124126 | 0.67 | 0.858267 |
Target: 5'- cGCGCuGugGCgCGCCCCcgccGUGGcGGAGg -3' miRNA: 3'- -CGUGuUugUG-GUGGGGa---CACCcCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 30475 | 0.67 | 0.858267 |
Target: 5'- cCGCcGACGCgCAgggaUCCUGUGGGGGuGg -3' miRNA: 3'- cGUGuUUGUG-GUg---GGGACACCCCCuC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 43379 | 0.68 | 0.800049 |
Target: 5'- gGUGCGAACGCgGgCCagccGUGGGGGAc -3' miRNA: 3'- -CGUGUUUGUGgUgGGga--CACCCCCUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 105655 | 0.68 | 0.817554 |
Target: 5'- gGCGCccAACACCACguuCUUUGaGGGGGGGa -3' miRNA: 3'- -CGUGu-UUGUGGUG---GGGACaCCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 40487 | 0.67 | 0.82606 |
Target: 5'- cGgACGAGCcuGCCugUgCUGggccGGGGGAGg -3' miRNA: 3'- -CgUGUUUG--UGGugGgGACa---CCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 113634 | 0.67 | 0.82606 |
Target: 5'- uGCGCGgccGGCGCCGCCa-UGUGGGuGGcGg -3' miRNA: 3'- -CGUGU---UUGUGGUGGggACACCC-CCuC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 80534 | 0.67 | 0.82606 |
Target: 5'- gGC-CAGACGCuCGgCCCgGcGGGGGGGc -3' miRNA: 3'- -CGuGUUUGUG-GUgGGGaCaCCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 119494 | 0.67 | 0.82606 |
Target: 5'- cGguUAucCGCUACCCCUGaGGcGGGGGc -3' miRNA: 3'- -CguGUuuGUGGUGGGGACaCC-CCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 36395 | 0.67 | 0.834392 |
Target: 5'- uGCGC-GGCGCCGgggccCCCCUGccGGGcGGGGc -3' miRNA: 3'- -CGUGuUUGUGGU-----GGGGACa-CCC-CCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 26269 | 0.67 | 0.841735 |
Target: 5'- cGCACucGCACCGCgCCUGcgcgcgcUGGGGccuGGGc -3' miRNA: 3'- -CGUGuuUGUGGUGgGGAC-------ACCCC---CUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 68585 | 0.67 | 0.849715 |
Target: 5'- cGCuCGAGgGCCGCCuCCaGUccgcgcgGGGGGAGc -3' miRNA: 3'- -CGuGUUUgUGGUGG-GGaCA-------CCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 69174 | 0.67 | 0.850502 |
Target: 5'- aGCcCGAugGCgGgCCagGUGGGGGAGg -3' miRNA: 3'- -CGuGUUugUGgUgGGgaCACCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 6675 | 0.67 | 0.850502 |
Target: 5'- gGC-CGGGCGCCGCCUUcGUGGacGGGAc -3' miRNA: 3'- -CGuGUUUGUGGUGGGGaCACC--CCCUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 98501 | 0.67 | 0.853632 |
Target: 5'- gGCGgGAGCgACgCGCCCCcGUaggcccgccaugcgcGGGGGGGg -3' miRNA: 3'- -CGUgUUUG-UG-GUGGGGaCA---------------CCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 27260 | 0.67 | 0.858267 |
Target: 5'- cGCGgGAcCGCaGCCCCgUGgcgcgcggGGGGGAGg -3' miRNA: 3'- -CGUgUUuGUGgUGGGG-ACa-------CCCCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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