Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5393 | 5' | -56.6 | NC_001798.1 | + | 68585 | 0.67 | 0.849715 |
Target: 5'- cGCuCGAGgGCCGCCuCCaGUccgcgcgGGGGGAGc -3' miRNA: 3'- -CGuGUUUgUGGUGG-GGaCA-------CCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 26269 | 0.67 | 0.841735 |
Target: 5'- cGCACucGCACCGCgCCUGcgcgcgcUGGGGccuGGGc -3' miRNA: 3'- -CGUGuuUGUGGUGgGGAC-------ACCCC---CUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 36395 | 0.67 | 0.834392 |
Target: 5'- uGCGC-GGCGCCGgggccCCCCUGccGGGcGGGGc -3' miRNA: 3'- -CGUGuUUGUGGU-----GGGGACa-CCC-CCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 40487 | 0.67 | 0.82606 |
Target: 5'- cGgACGAGCcuGCCugUgCUGggccGGGGGAGg -3' miRNA: 3'- -CgUGUUUG--UGGugGgGACa---CCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 113634 | 0.67 | 0.82606 |
Target: 5'- uGCGCGgccGGCGCCGCCa-UGUGGGuGGcGg -3' miRNA: 3'- -CGUGU---UUGUGGUGGggACACCC-CCuC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 80534 | 0.67 | 0.82606 |
Target: 5'- gGC-CAGACGCuCGgCCCgGcGGGGGGGc -3' miRNA: 3'- -CGuGUUUGUG-GUgGGGaCaCCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 119494 | 0.67 | 0.82606 |
Target: 5'- cGguUAucCGCUACCCCUGaGGcGGGGGc -3' miRNA: 3'- -CguGUuuGUGGUGGGGACaCC-CCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 105655 | 0.68 | 0.817554 |
Target: 5'- gGCGCccAACACCACguuCUUUGaGGGGGGGa -3' miRNA: 3'- -CGUGu-UUGUGGUG---GGGACaCCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 2611 | 0.68 | 0.808881 |
Target: 5'- gGCGCgGGGCGCCGCccggcggcgCCCUGgccGGGGcGGGg -3' miRNA: 3'- -CGUG-UUUGUGGUG---------GGGACa--CCCC-CUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 107041 | 0.68 | 0.800049 |
Target: 5'- gGCgACGGACGCCguuuugGCUCCUcauaucggGGGGGAGg -3' miRNA: 3'- -CG-UGUUUGUGG------UGGGGAca------CCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 114467 | 0.68 | 0.800049 |
Target: 5'- cCACcGAgGCCAUugCCCUGcucacGGGGGAGg -3' miRNA: 3'- cGUGuUUgUGGUG--GGGACa----CCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 126705 | 0.68 | 0.800049 |
Target: 5'- aGCuCGu-CGCgACCCUgcucGUGGGGGAGu -3' miRNA: 3'- -CGuGUuuGUGgUGGGGa---CACCCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 5023 | 0.68 | 0.800049 |
Target: 5'- cCGCcGACAUCGCCUCcgaccggggUGUGcGGGGGGg -3' miRNA: 3'- cGUGuUUGUGGUGGGG---------ACAC-CCCCUC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 43379 | 0.68 | 0.800049 |
Target: 5'- gGUGCGAACGCgGgCCagccGUGGGGGAc -3' miRNA: 3'- -CGUGUUUGUGgUgGGga--CACCCCCUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 107734 | 0.68 | 0.791067 |
Target: 5'- gGCGCGcACGUUugCCCgcgagGUGGGGGGa -3' miRNA: 3'- -CGUGUuUGUGGugGGGa----CACCCCCUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 54240 | 0.68 | 0.791067 |
Target: 5'- cCACGAugACCGCCCCgagcUGGGcccGGAu -3' miRNA: 3'- cGUGUUugUGGUGGGGac--ACCC---CCUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 137130 | 0.68 | 0.791067 |
Target: 5'- -aACGAACcgcaACCGCCCCc-UGGGGGuGa -3' miRNA: 3'- cgUGUUUG----UGGUGGGGacACCCCCuC- -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 116245 | 0.68 | 0.781943 |
Target: 5'- gGCGCu-GCuGCCGCCCCUcGUGuGGGAc -3' miRNA: 3'- -CGUGuuUG-UGGUGGGGA-CACcCCCUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 30250 | 0.69 | 0.763305 |
Target: 5'- -aGCAGccCGCCGCCCCgcacgccUGGGGGAu -3' miRNA: 3'- cgUGUUu-GUGGUGGGGac-----ACCCCCUc -5' |
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5393 | 5' | -56.6 | NC_001798.1 | + | 23854 | 0.69 | 0.763305 |
Target: 5'- gGCugGgcGACAgCCGCCCCggccucUGGGGGGc -3' miRNA: 3'- -CGugU--UUGU-GGUGGGGac----ACCCCCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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