miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 3' -54.3 NC_001798.1 + 93267 0.66 0.95926
Target:  5'- cCGCGGcccGCGcCGGCGCCgUCGggGCGu -3'
miRNA:   3'- -GUGUUuucCGU-GCCGCGG-GGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 1631 0.66 0.95926
Target:  5'- gGCAGAGGcGCagcgGCGGCGCgUCGGggUa -3'
miRNA:   3'- gUGUUUUC-CG----UGCCGCGgGGCUuuGc -5'
5395 3' -54.3 NC_001798.1 + 34490 0.66 0.95926
Target:  5'- uGCGAGAacGCGCGGCGUUCgaGggGCGc -3'
miRNA:   3'- gUGUUUUc-CGUGCCGCGGGg-CuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 26339 0.66 0.95926
Target:  5'- gCGCGAcgccGuGCGCGGCGgCCCG--GCGg -3'
miRNA:   3'- -GUGUUuu--C-CGUGCCGCgGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 32965 0.66 0.95926
Target:  5'- gGgGGGGGGgACGGacacgGCCCCGAAcaGCa -3'
miRNA:   3'- gUgUUUUCCgUGCCg----CGGGGCUU--UGc -5'
5395 3' -54.3 NC_001798.1 + 59259 0.66 0.95926
Target:  5'- gCACccGGGGCccgACGGCGCUCUcgguGAAGCu -3'
miRNA:   3'- -GUGuuUUCCG---UGCCGCGGGG----CUUUGc -5'
5395 3' -54.3 NC_001798.1 + 121693 0.66 0.95926
Target:  5'- gGCuGGGGGcCGCGGCucccGCCgCCGcGACGg -3'
miRNA:   3'- gUGuUUUCC-GUGCCG----CGG-GGCuUUGC- -5'
5395 3' -54.3 NC_001798.1 + 154104 0.66 0.95926
Target:  5'- nGCGGccGGCGcCGGgGaCCCCGGcGGCGg -3'
miRNA:   3'- gUGUUuuCCGU-GCCgC-GGGGCU-UUGC- -5'
5395 3' -54.3 NC_001798.1 + 44274 0.66 0.958893
Target:  5'- aUACAGGGGG-GCGGUGCUgccgcugCCGAuGCGg -3'
miRNA:   3'- -GUGUUUUCCgUGCCGCGG-------GGCUuUGC- -5'
5395 3' -54.3 NC_001798.1 + 95579 0.66 0.955873
Target:  5'- cCACGAggcgGAGGCccuggucagccagcuCGGCGCCgCCGggGa- -3'
miRNA:   3'- -GUGUU----UUCCGu--------------GCCGCGG-GGCuuUgc -5'
5395 3' -54.3 NC_001798.1 + 103854 0.66 0.955486
Target:  5'- cCACGGAcAGGUACuGGgGaaugaaCCCGAGACa -3'
miRNA:   3'- -GUGUUU-UCCGUG-CCgCg-----GGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 2249 0.66 0.955486
Target:  5'- gGCGGcGGGCGCGcCGCCggGggGCGg -3'
miRNA:   3'- gUGUUuUCCGUGCcGCGGggCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 6066 0.66 0.955486
Target:  5'- gGCGAGcgGGGCACcGaCGCaCCCGGAuCGg -3'
miRNA:   3'- gUGUUU--UCCGUGcC-GCG-GGGCUUuGC- -5'
5395 3' -54.3 NC_001798.1 + 22402 0.66 0.955486
Target:  5'- gGCGAGccgGGGCGCGGCGgCgUCGAucGCu -3'
miRNA:   3'- gUGUUU---UCCGUGCCGC-GgGGCUu-UGc -5'
5395 3' -54.3 NC_001798.1 + 82265 0.66 0.955486
Target:  5'- gGCcccAGGCcCGGuUGCCCCG-AGCGa -3'
miRNA:   3'- gUGuuuUCCGuGCC-GCGGGGCuUUGC- -5'
5395 3' -54.3 NC_001798.1 + 127751 0.66 0.955486
Target:  5'- cCGCAAcacccGGCGCcaaGCGCCCCGcGGACc -3'
miRNA:   3'- -GUGUUuu---CCGUGc--CGCGGGGC-UUUGc -5'
5395 3' -54.3 NC_001798.1 + 28950 0.66 0.95148
Target:  5'- cCGCGA-GGGCcCGGCgccGCCCCGccGCu -3'
miRNA:   3'- -GUGUUuUCCGuGCCG---CGGGGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 136795 0.66 0.95148
Target:  5'- aGgAGAAGGCAgCGGaCGCgCUCGAAGgGa -3'
miRNA:   3'- gUgUUUUCCGU-GCC-GCG-GGGCUUUgC- -5'
5395 3' -54.3 NC_001798.1 + 25255 0.66 0.95148
Target:  5'- cCGCAGGGcGGC-UGGCGCCgccagccgCCGggGCc -3'
miRNA:   3'- -GUGUUUU-CCGuGCCGCGG--------GGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 44870 0.66 0.95148
Target:  5'- gCGCAGAGccGCGCGcGUGUUCCGGGAUGg -3'
miRNA:   3'- -GUGUUUUc-CGUGC-CGCGGGGCUUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.