miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 3' -54.3 NC_001798.1 + 149972 0.79 0.353426
Target:  5'- aCGCcgacGGGGGCGCGGCGCCcgcggacgCCGggGCGa -3'
miRNA:   3'- -GUGu---UUUCCGUGCCGCGG--------GGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 2540 0.79 0.361404
Target:  5'- gGCGGGGGGCGCGGC-CCCCGcgggagGGGCGg -3'
miRNA:   3'- gUGUUUUCCGUGCCGcGGGGC------UUUGC- -5'
5395 3' -54.3 NC_001798.1 + 72499 0.78 0.377732
Target:  5'- gCGCcuGGGGCccUGGCGCCCCGAGGCc -3'
miRNA:   3'- -GUGuuUUCCGu-GCCGCGGGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 5949 0.78 0.39455
Target:  5'- aCAUAAAGGGC-CGGCGUCCCGGucGCc -3'
miRNA:   3'- -GUGUUUUCCGuGCCGCGGGGCUu-UGc -5'
5395 3' -54.3 NC_001798.1 + 150469 0.77 0.4296
Target:  5'- gCGCGGGGGcGCGCGGCgcGCCCCGAcGACu -3'
miRNA:   3'- -GUGUUUUC-CGUGCCG--CGGGGCU-UUGc -5'
5395 3' -54.3 NC_001798.1 + 93496 0.77 0.447798
Target:  5'- gUACGAGGGGCgccccACGGCGCCCCucgucGGCGg -3'
miRNA:   3'- -GUGUUUUCCG-----UGCCGCGGGGcu---UUGC- -5'
5395 3' -54.3 NC_001798.1 + 34783 0.77 0.447798
Target:  5'- aCGCGGAAacgccgccGGCGCGGCccgggGCCCCGggGCc -3'
miRNA:   3'- -GUGUUUU--------CCGUGCCG-----CGGGGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 23566 0.76 0.466416
Target:  5'- cCGCGAGggccccGGGgGCGGCGCCCCGGccgAGCc -3'
miRNA:   3'- -GUGUUU------UCCgUGCCGCGGGGCU---UUGc -5'
5395 3' -54.3 NC_001798.1 + 27549 0.76 0.485427
Target:  5'- gCGCGgggGGAGGgGCGGCGCCCgCGGgggAGCGg -3'
miRNA:   3'- -GUGU---UUUCCgUGCCGCGGG-GCU---UUGC- -5'
5395 3' -54.3 NC_001798.1 + 123366 0.75 0.524497
Target:  5'- gCACAGcGGGCACucuGGCGUCCCcAGGCGa -3'
miRNA:   3'- -GUGUUuUCCGUG---CCGCGGGGcUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 147108 0.75 0.534455
Target:  5'- uCGCGAAAGGCGCgaaaGGgGCCCCcgGAGGCu -3'
miRNA:   3'- -GUGUUUUCCGUG----CCgCGGGG--CUUUGc -5'
5395 3' -54.3 NC_001798.1 + 79659 0.75 0.534455
Target:  5'- gACAAAcucGGCGCGcugcugauGCGUCCCGAGGCGg -3'
miRNA:   3'- gUGUUUu--CCGUGC--------CGCGGGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 14282 0.75 0.534455
Target:  5'- gAUGAGGGGgACGGCaaagcCCCCGGAACGg -3'
miRNA:   3'- gUGUUUUCCgUGCCGc----GGGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 31867 0.75 0.534455
Target:  5'- cCGCGGAGGGgGCGGCGgcccgcCCCCGGAAg- -3'
miRNA:   3'- -GUGUUUUCCgUGCCGC------GGGGCUUUgc -5'
5395 3' -54.3 NC_001798.1 + 109553 0.75 0.534455
Target:  5'- cCGCGGccuauGGCGCGGUgGCCCCGAGcGCGg -3'
miRNA:   3'- -GUGUUuu---CCGUGCCG-CGGGGCUU-UGC- -5'
5395 3' -54.3 NC_001798.1 + 55999 0.75 0.54448
Target:  5'- gGCGAGGGGCugguagGCGG-GUCCCGAAGCa -3'
miRNA:   3'- gUGUUUUCCG------UGCCgCGGGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 125251 0.75 0.548507
Target:  5'- uGCGuuGGGGCACGGCGUccuccggcgcgcacuCCCGAAACc -3'
miRNA:   3'- gUGUu-UUCCGUGCCGCG---------------GGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 31230 0.74 0.564704
Target:  5'- aGCAGcAGcaGCgGCGGCGCCCCGuuGCGg -3'
miRNA:   3'- gUGUUuUC--CG-UGCCGCGGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 3207 0.74 0.574891
Target:  5'- gCGCGGAggcGGGCGCggcgcucaGGCGCCCCaGGGCGg -3'
miRNA:   3'- -GUGUUU---UCCGUG--------CCGCGGGGcUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 72845 0.74 0.58512
Target:  5'- gCACGcgcGGCACGG-GCCCCGAG-CGg -3'
miRNA:   3'- -GUGUuuuCCGUGCCgCGGGGCUUuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.