miRNA display CGI


Results 41 - 60 of 230 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 3' -54.3 NC_001798.1 + 52978 0.72 0.688049
Target:  5'- gCGCGAccGGGCugGGCGgCCCGccACGc -3'
miRNA:   3'- -GUGUUu-UCCGugCCGCgGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 45142 0.72 0.718401
Target:  5'- -uCGAGAGGCugGcGCGCcaccaCCCGGGACu -3'
miRNA:   3'- guGUUUUCCGugC-CGCG-----GGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 153048 0.72 0.718401
Target:  5'- gCGCGGuuGGC-CGGCGCcgcccCCUGggGCGg -3'
miRNA:   3'- -GUGUUuuCCGuGCCGCG-----GGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 110220 0.72 0.728381
Target:  5'- uGCGAAGGGCACGcGCGggagauugagCCGAAGCGg -3'
miRNA:   3'- gUGUUUUCCGUGC-CGCgg--------GGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 80048 0.71 0.738276
Target:  5'- gCGCugguGGC-CGGCGUUCCGGAACa -3'
miRNA:   3'- -GUGuuuuCCGuGCCGCGGGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 69492 0.71 0.738276
Target:  5'- aGCGAugggcGGGCGCaGGaCGCgCCGGAGCGg -3'
miRNA:   3'- gUGUUu----UCCGUG-CC-GCGgGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 95007 0.71 0.748076
Target:  5'- cCGCAGGGcGGCGCGG-GCCUgGAGGCc -3'
miRNA:   3'- -GUGUUUU-CCGUGCCgCGGGgCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 9145 0.71 0.757773
Target:  5'- gGCAcgcGGGCGCGGCGCCgCCcgcgccggGggGCa -3'
miRNA:   3'- gUGUuu-UCCGUGCCGCGG-GG--------CuuUGc -5'
5395 3' -54.3 NC_001798.1 + 2503 0.71 0.757773
Target:  5'- cCGCG--GGGCGCGGCGgCCgCGGcGGCGg -3'
miRNA:   3'- -GUGUuuUCCGUGCCGCgGG-GCU-UUGC- -5'
5395 3' -54.3 NC_001798.1 + 25048 0.71 0.758737
Target:  5'- cCGCGGGAGGCGCGcaagcgcaagagcccCGCCCCGGccagGGCGc -3'
miRNA:   3'- -GUGUUUUCCGUGCc--------------GCGGGGCU----UUGC- -5'
5395 3' -54.3 NC_001798.1 + 150552 0.71 0.767357
Target:  5'- gACAAAGgagagcGGCcCGGgGCCCgCGggGCGg -3'
miRNA:   3'- gUGUUUU------CCGuGCCgCGGG-GCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 3778 0.71 0.767357
Target:  5'- cCACAc-GGGCGcCGGgGCgCCCGAGGCc -3'
miRNA:   3'- -GUGUuuUCCGU-GCCgCG-GGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 43025 0.71 0.775878
Target:  5'- --gGGGGGaGCGCGGgGCCCCGGGcgcaaauGCGg -3'
miRNA:   3'- gugUUUUC-CGUGCCgCGGGGCUU-------UGC- -5'
5395 3' -54.3 NC_001798.1 + 2195 0.71 0.776819
Target:  5'- gCGCAuccAGGCcgccgcGCGGCGCagcgggCCCGAGGCGc -3'
miRNA:   3'- -GUGUuu-UCCG------UGCCGCG------GGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 111591 0.71 0.776819
Target:  5'- aGCGGGGGGCccggcgggGCGGCcuccuggaGCCCCgGggGCGg -3'
miRNA:   3'- gUGUUUUCCG--------UGCCG--------CGGGG-CuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 71094 0.71 0.776819
Target:  5'- cCGCGGucGGCGUGcGCGCCCCcgGGGACGc -3'
miRNA:   3'- -GUGUUuuCCGUGC-CGCGGGG--CUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 104871 0.71 0.776819
Target:  5'- aUACAGAcacaGCACGGCGCaCUCGAAGgCGg -3'
miRNA:   3'- -GUGUUUuc--CGUGCCGCG-GGGCUUU-GC- -5'
5395 3' -54.3 NC_001798.1 + 105613 0.71 0.776819
Target:  5'- gGCGGcGGGCgggcgacgACGGCGCUCCGGGAa- -3'
miRNA:   3'- gUGUUuUCCG--------UGCCGCGGGGCUUUgc -5'
5395 3' -54.3 NC_001798.1 + 39871 0.71 0.776819
Target:  5'- gGCuucGGGGGUGcCGGCGUCCuCGggGCGg -3'
miRNA:   3'- gUGu--UUUCCGU-GCCGCGGG-GCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 150407 0.7 0.786148
Target:  5'- uCGCAGAcaccacggGGGCgGCGGCGgCgCGggGCGg -3'
miRNA:   3'- -GUGUUU--------UCCG-UGCCGCgGgGCuuUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.