miRNA display CGI


Results 61 - 80 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 3' -54.3 NC_001798.1 + 28656 0.7 0.786148
Target:  5'- cCGCGAccGGUucCGGCGCCgcguggcggcggCCGAGGCGg -3'
miRNA:   3'- -GUGUUuuCCGu-GCCGCGG------------GGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 3022 0.7 0.786148
Target:  5'- gGCGGGccGGGCucCGGCcaGCCCCGgcACGg -3'
miRNA:   3'- gUGUUU--UCCGu-GCCG--CGGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 1478 0.7 0.795337
Target:  5'- gCGCGccGGGCGCcauGGCGUcgcccgcgCCCGAGGCGg -3'
miRNA:   3'- -GUGUuuUCCGUG---CCGCG--------GGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 27192 0.7 0.795337
Target:  5'- gCGCGgggGGAGGgGCGGgGgaagcCCCCGggGCGg -3'
miRNA:   3'- -GUGU---UUUCCgUGCCgC-----GGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 24298 0.7 0.795337
Target:  5'- gCGCGAGAa-CGCGGCGCUgaCCGggGCGc -3'
miRNA:   3'- -GUGUUUUccGUGCCGCGG--GGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 93022 0.7 0.795337
Target:  5'- cCAC-GAGGGCGCGGCccuCCCCGccGACa -3'
miRNA:   3'- -GUGuUUUCCGUGCCGc--GGGGCu-UUGc -5'
5395 3' -54.3 NC_001798.1 + 52618 0.7 0.804376
Target:  5'- gACGGcGGGUcgACGGC-CCCCGAggUGg -3'
miRNA:   3'- gUGUUuUCCG--UGCCGcGGGGCUuuGC- -5'
5395 3' -54.3 NC_001798.1 + 86476 0.7 0.804376
Target:  5'- uGCuucGGGcCGCGG-GCCCCGAGGCc -3'
miRNA:   3'- gUGuuuUCC-GUGCCgCGGGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 90079 0.7 0.804376
Target:  5'- gACGAcgGGGGC-CGGCagGCCCCugGAGGCGa -3'
miRNA:   3'- gUGUU--UUCCGuGCCG--CGGGG--CUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 64889 0.7 0.804376
Target:  5'- gGCuGAAGGgAC-GCGCCCCGcGAACGc -3'
miRNA:   3'- gUGuUUUCCgUGcCGCGGGGC-UUUGC- -5'
5395 3' -54.3 NC_001798.1 + 130507 0.7 0.810609
Target:  5'- uCGCAGGccAGGCcgacgaugccggugGCGGCgaugGCCCCGAggUGg -3'
miRNA:   3'- -GUGUUU--UCCG--------------UGCCG----CGGGGCUuuGC- -5'
5395 3' -54.3 NC_001798.1 + 5875 0.7 0.813255
Target:  5'- uGCccGGGGCccgcgucaucccGCGGgcucCGCCCCGAGGCGg -3'
miRNA:   3'- gUGuuUUCCG------------UGCC----GCGGGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 23895 0.7 0.813255
Target:  5'- gCGgAGGAGGCGCGG-GCCCgguuCGAGGCc -3'
miRNA:   3'- -GUgUUUUCCGUGCCgCGGG----GCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 32358 0.7 0.813255
Target:  5'- aCGCGGAGGGCGgccccgagccCGGgGCCCgCGAcccGGCGc -3'
miRNA:   3'- -GUGUUUUCCGU----------GCCgCGGG-GCU---UUGC- -5'
5395 3' -54.3 NC_001798.1 + 40573 0.7 0.813255
Target:  5'- gACGugcGAGGGUGCGuaGgCCCGAGGCGg -3'
miRNA:   3'- gUGU---UUUCCGUGCcgCgGGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 52037 0.7 0.813255
Target:  5'- gGCccGGGGUGCGcGCGCuCCUGggGCGc -3'
miRNA:   3'- gUGuuUUCCGUGC-CGCG-GGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 77263 0.7 0.813255
Target:  5'- gGCccuGGGCGCGGcCGCCCgCGAccCGg -3'
miRNA:   3'- gUGuuuUCCGUGCC-GCGGG-GCUuuGC- -5'
5395 3' -54.3 NC_001798.1 + 154045 0.7 0.813255
Target:  5'- gCGCGccGGGGCGCGGCacggcuggaGCgCCGggGCGc -3'
miRNA:   3'- -GUGUu-UUCCGUGCCG---------CGgGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 154424 0.7 0.821967
Target:  5'- gGCGGgcGGCAgGGCaGCCCCGc-GCGc -3'
miRNA:   3'- gUGUUuuCCGUgCCG-CGGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 132155 0.7 0.821967
Target:  5'- -cCGGcGGGCGgGGCGCCCCccccGGACGc -3'
miRNA:   3'- guGUUuUCCGUgCCGCGGGGc---UUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.