miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 3' -54.3 NC_001798.1 + 125891 0.66 0.942764
Target:  5'- cCACuuggaauuGGAGGCGCGGCuaaaGUCCCGcgcGCGc -3'
miRNA:   3'- -GUGu-------UUUCCGUGCCG----CGGGGCuu-UGC- -5'
5395 3' -54.3 NC_001798.1 + 135791 0.66 0.942764
Target:  5'- cCGgAGGAGGC-CGugugcGCGgCCCGggGCGu -3'
miRNA:   3'- -GUgUUUUCCGuGC-----CGCgGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 14456 0.67 0.938047
Target:  5'- aACAAcAGGCAC-GCcCCCCGGcGGCGg -3'
miRNA:   3'- gUGUUuUCCGUGcCGcGGGGCU-UUGC- -5'
5395 3' -54.3 NC_001798.1 + 51959 0.67 0.938047
Target:  5'- gCGCGGGAGGgGCcGCGCCCCc----- -3'
miRNA:   3'- -GUGUUUUCCgUGcCGCGGGGcuuugc -5'
5395 3' -54.3 NC_001798.1 + 121047 0.67 0.938047
Target:  5'- aCACAGcguauAAGcGCACGuGCGCCCgCGGgccccgagGACGc -3'
miRNA:   3'- -GUGUU-----UUC-CGUGC-CGCGGG-GCU--------UUGC- -5'
5395 3' -54.3 NC_001798.1 + 145793 0.67 0.938047
Target:  5'- aCACAGGAGcGCGCgGGCGgCa-GAAACGc -3'
miRNA:   3'- -GUGUUUUC-CGUG-CCGCgGggCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 106710 0.67 0.938047
Target:  5'- gACGGcc-GCGCGGCGUCCCGuccuAGCc -3'
miRNA:   3'- gUGUUuucCGUGCCGCGGGGCu---UUGc -5'
5395 3' -54.3 NC_001798.1 + 150375 0.67 0.938047
Target:  5'- gGCGGgcGGCGCGG-GCCCgGccGCGu -3'
miRNA:   3'- gUGUUuuCCGUGCCgCGGGgCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 24566 0.67 0.938047
Target:  5'- gGCGGc-GGC-CGGCGCgCgGAGGCGg -3'
miRNA:   3'- gUGUUuuCCGuGCCGCGgGgCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 27040 0.67 0.938047
Target:  5'- gGCGGgcGGCACGucucccGCGCCCgCGggGgGu -3'
miRNA:   3'- gUGUUuuCCGUGC------CGCGGG-GCuuUgC- -5'
5395 3' -54.3 NC_001798.1 + 150760 0.67 0.938047
Target:  5'- cCGCGAc-GGCAgGGcCGCCCCcAGACc -3'
miRNA:   3'- -GUGUUuuCCGUgCC-GCGGGGcUUUGc -5'
5395 3' -54.3 NC_001798.1 + 52769 0.67 0.938047
Target:  5'- cCGCGuccucGGCGCcccgGGCGCCCgugagCGGGACGg -3'
miRNA:   3'- -GUGUuuu--CCGUG----CCGCGGG-----GCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 15295 0.67 0.933088
Target:  5'- gGCGGu-GGuCGCGGCGa-CCGAAACGu -3'
miRNA:   3'- gUGUUuuCC-GUGCCGCggGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 34732 0.67 0.933088
Target:  5'- gGCG--AGGguCGG-GCCCgGGAGCGg -3'
miRNA:   3'- gUGUuuUCCguGCCgCGGGgCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 35435 0.67 0.933088
Target:  5'- gGCGGGAGGCGugggccgcUGGCGCCgCGGccCGu -3'
miRNA:   3'- gUGUUUUCCGU--------GCCGCGGgGCUuuGC- -5'
5395 3' -54.3 NC_001798.1 + 36310 0.67 0.933088
Target:  5'- gGCGGcGGGGCGCGG-GCCggggCCGggGCu -3'
miRNA:   3'- gUGUU-UUCCGUGCCgCGG----GGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 151834 0.67 0.933088
Target:  5'- -uUAGAGGGCGCGGgGCgU-GAGGCGg -3'
miRNA:   3'- guGUUUUCCGUGCCgCGgGgCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 9622 0.67 0.933088
Target:  5'- aGCAAcAGGGC-CGcccccagcacCGCCCCGAGGCGc -3'
miRNA:   3'- gUGUU-UUCCGuGCc---------GCGGGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 61821 0.67 0.933088
Target:  5'- cCGCcgcGGGCACGccuuCGCCCCGggGg- -3'
miRNA:   3'- -GUGuuuUCCGUGCc---GCGGGGCuuUgc -5'
5395 3' -54.3 NC_001798.1 + 3438 0.67 0.933088
Target:  5'- gCGCGu-AGGCGCGGCGCaggCUGGucAGCa -3'
miRNA:   3'- -GUGUuuUCCGUGCCGCGg--GGCU--UUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.