miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 3' -54.3 NC_001798.1 + 86 0.7 0.821967
Target:  5'- gGCGGgcGGCAgGGCaGCCCCGc-GCGc -3'
miRNA:   3'- gUGUUuuCCGUgCCG-CGGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 1478 0.7 0.795337
Target:  5'- gCGCGccGGGCGCcauGGCGUcgcccgcgCCCGAGGCGg -3'
miRNA:   3'- -GUGUuuUCCGUG---CCGCG--------GGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 1631 0.66 0.95926
Target:  5'- gGCAGAGGcGCagcgGCGGCGCgUCGGggUa -3'
miRNA:   3'- gUGUUUUC-CG----UGCCGCGgGGCUuuGc -5'
5395 3' -54.3 NC_001798.1 + 2195 0.71 0.776819
Target:  5'- gCGCAuccAGGCcgccgcGCGGCGCagcgggCCCGAGGCGc -3'
miRNA:   3'- -GUGUuu-UCCG------UGCCGCG------GGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 2249 0.66 0.955486
Target:  5'- gGCGGcGGGCGCGcCGCCggGggGCGg -3'
miRNA:   3'- gUGUUuUCCGUGCcGCGGggCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 2411 0.68 0.877613
Target:  5'- gGCcGAGGGCGcCGGCguguggcuggGCCCCGGcggcuGGCGg -3'
miRNA:   3'- gUGuUUUCCGU-GCCG----------CGGGGCU-----UUGC- -5'
5395 3' -54.3 NC_001798.1 + 2503 0.71 0.757773
Target:  5'- cCGCG--GGGCGCGGCGgCCgCGGcGGCGg -3'
miRNA:   3'- -GUGUuuUCCGUGCCGCgGG-GCU-UUGC- -5'
5395 3' -54.3 NC_001798.1 + 2540 0.79 0.361404
Target:  5'- gGCGGGGGGCGCGGC-CCCCGcgggagGGGCGg -3'
miRNA:   3'- gUGUUUUCCGUGCCGcGGGGC------UUUGC- -5'
5395 3' -54.3 NC_001798.1 + 2611 0.74 0.615984
Target:  5'- gGCGcgGGGCgccgcccgGCGGCGCCCuggcCGggGCGg -3'
miRNA:   3'- gUGUuuUCCG--------UGCCGCGGG----GCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 2677 0.67 0.910822
Target:  5'- gCGCGGAggcGGGCGCGGCgagcgagucgGCCgCGGcGACGg -3'
miRNA:   3'- -GUGUUU---UCCGUGCCG----------CGGgGCU-UUGC- -5'
5395 3' -54.3 NC_001798.1 + 2780 0.67 0.916171
Target:  5'- gGCGGAgcucagcAGGCGCGG-GCUCCGcgGCa -3'
miRNA:   3'- gUGUUU-------UCCGUGCCgCGGGGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 2987 0.68 0.89824
Target:  5'- gGCGGccGGCccGCGG-GCCCCGGGcGCGg -3'
miRNA:   3'- gUGUUuuCCG--UGCCgCGGGGCUU-UGC- -5'
5395 3' -54.3 NC_001798.1 + 3022 0.7 0.786148
Target:  5'- gGCGGGccGGGCucCGGCcaGCCCCGgcACGg -3'
miRNA:   3'- gUGUUU--UCCGu-GCCG--CGGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 3207 0.74 0.574891
Target:  5'- gCGCGGAggcGGGCGCggcgcucaGGCGCCCCaGGGCGg -3'
miRNA:   3'- -GUGUUU---UCCGUG--------CCGCGGGGcUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 3438 0.67 0.933088
Target:  5'- gCGCGu-AGGCGCGGCGCaggCUGGucAGCa -3'
miRNA:   3'- -GUGUuuUCCGUGCCGCGg--GGCU--UUGc -5'
5395 3' -54.3 NC_001798.1 + 3778 0.71 0.767357
Target:  5'- cCACAc-GGGCGcCGGgGCgCCCGAGGCc -3'
miRNA:   3'- -GUGUuuUCCGU-GCCgCG-GGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 3896 0.68 0.877613
Target:  5'- gGCGGGGGGCcggccccgggccACGGCuCCCCGcuGACGu -3'
miRNA:   3'- gUGUUUUCCG------------UGCCGcGGGGCu-UUGC- -5'
5395 3' -54.3 NC_001798.1 + 4046 0.68 0.877613
Target:  5'- cCGCGc-GGGCccgGCGGCGCUCC-AGGCGg -3'
miRNA:   3'- -GUGUuuUCCG---UGCCGCGGGGcUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 5346 0.69 0.847018
Target:  5'- cCGCAuuAuGCGCGGCcccGCCCCGAcGCc -3'
miRNA:   3'- -GUGUuuUcCGUGCCG---CGGGGCUuUGc -5'
5395 3' -54.3 NC_001798.1 + 5875 0.7 0.813255
Target:  5'- uGCccGGGGCccgcgucaucccGCGGgcucCGCCCCGAGGCGg -3'
miRNA:   3'- gUGuuUUCCG------------UGCC----GCGGGGCUUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.