miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 3' -54.3 NC_001798.1 + 5949 0.78 0.39455
Target:  5'- aCAUAAAGGGC-CGGCGUCCCGGucGCc -3'
miRNA:   3'- -GUGUUUUCCGuGCCGCGGGGCUu-UGc -5'
5395 3' -54.3 NC_001798.1 + 6066 0.66 0.955486
Target:  5'- gGCGAGcgGGGCACcGaCGCaCCCGGAuCGg -3'
miRNA:   3'- gUGUUU--UCCGUGcC-GCG-GGGCUUuGC- -5'
5395 3' -54.3 NC_001798.1 + 6629 0.72 0.688049
Target:  5'- gGCcGGGGGgACGGgGCCCCGAucccAACa -3'
miRNA:   3'- gUGuUUUCCgUGCCgCGGGGCU----UUGc -5'
5395 3' -54.3 NC_001798.1 + 6813 0.67 0.910822
Target:  5'- -cCGAGAGGCggccagaacuGCGGUGaccgaCCCGGAGCu -3'
miRNA:   3'- guGUUUUCCG----------UGCCGCg----GGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 9001 0.67 0.927887
Target:  5'- aCGCAAucccGCACaGGacgGCCCCGAGACc -3'
miRNA:   3'- -GUGUUuuc-CGUG-CCg--CGGGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 9145 0.71 0.757773
Target:  5'- gGCAcgcGGGCGCGGCGCCgCCcgcgccggGggGCa -3'
miRNA:   3'- gUGUuu-UCCGUGCCGCGG-GG--------CuuUGc -5'
5395 3' -54.3 NC_001798.1 + 9622 0.67 0.933088
Target:  5'- aGCAAcAGGGC-CGcccccagcacCGCCCCGAGGCGc -3'
miRNA:   3'- gUGUU-UUCCGuGCc---------GCGGGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 9834 0.68 0.884718
Target:  5'- gCACAgguAGAGGC-CGGCGUgCUGggGgGa -3'
miRNA:   3'- -GUGU---UUUCCGuGCCGCGgGGCuuUgC- -5'
5395 3' -54.3 NC_001798.1 + 9945 0.66 0.95148
Target:  5'- uCGCGGcGGGgGCGuaGUCCUGGAACa -3'
miRNA:   3'- -GUGUUuUCCgUGCcgCGGGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 11628 0.68 0.89824
Target:  5'- cCGCucgcGGGCGCgGGCGUCCCuguguccccgGggGCGg -3'
miRNA:   3'- -GUGuuu-UCCGUG-CCGCGGGG----------CuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 13076 0.72 0.688049
Target:  5'- uGCAGGAGGCGCGG-GCCCgGu-GCu -3'
miRNA:   3'- gUGUUUUCCGUGCCgCGGGgCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 14282 0.75 0.534455
Target:  5'- gAUGAGGGGgACGGCaaagcCCCCGGAACGg -3'
miRNA:   3'- gUGUUUUCCgUGCCGc----GGGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 14456 0.67 0.938047
Target:  5'- aACAAcAGGCAC-GCcCCCCGGcGGCGg -3'
miRNA:   3'- gUGUUuUCCGUGcCGcGGGGCU-UUGC- -5'
5395 3' -54.3 NC_001798.1 + 15257 0.73 0.667563
Target:  5'- gUugGGGGGGUacggGCGGUGCCCCGGGuucCGg -3'
miRNA:   3'- -GugUUUUCCG----UGCCGCGGGGCUUu--GC- -5'
5395 3' -54.3 NC_001798.1 + 15295 0.67 0.933088
Target:  5'- gGCGGu-GGuCGCGGCGa-CCGAAACGu -3'
miRNA:   3'- gUGUUuuCC-GUGCCGCggGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 15422 0.68 0.884718
Target:  5'- cCGgGAGGGGUuguuUGGgGCCCCGGAGuCGu -3'
miRNA:   3'- -GUgUUUUCCGu---GCCgCGGGGCUUU-GC- -5'
5395 3' -54.3 NC_001798.1 + 16630 0.66 0.95148
Target:  5'- aCGCGccGGGGCAggucuugccgccCGGCGUCCgCGGAACc -3'
miRNA:   3'- -GUGUu-UUCCGU------------GCCGCGGG-GCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 19723 0.68 0.884718
Target:  5'- aCACAccGGGCugGGgGUCCCGc-GCu -3'
miRNA:   3'- -GUGUuuUCCGugCCgCGGGGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 22402 0.66 0.955486
Target:  5'- gGCGAGccgGGGCGCGGCGgCgUCGAucGCu -3'
miRNA:   3'- gUGUUU---UCCGUGCCGC-GgGGCUu-UGc -5'
5395 3' -54.3 NC_001798.1 + 23566 0.76 0.466416
Target:  5'- cCGCGAGggccccGGGgGCGGCGCCCCGGccgAGCc -3'
miRNA:   3'- -GUGUUU------UCCgUGCCGCGGGGCU---UUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.